YALI0F24563g - NUP85

Overview

Description uniprot|Q8WZL7 Yarrowia lipolytica YALI0F24563g NUP85 Subunit of the Nup84p subcomplex of the nuclear pore complex
Locus type CDS
Gene name NUP85
Locus tag YALI0F24563g

Location

Species Yarrowia lipolytica Positions 3191965..3194207
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 2243 (nuc.)
Previous locus YALI0F24552g Next locus YALI0F24585g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F24563g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F24563gYALI0F24563g_mRNA-001YALI0F24563g_CDS-001

Nucleotide sequence

 

>YALI0F24563g
ATGTTTTCCGCACCGCCAGCCACCATAAATGGCGCAGACAACTACATATCTCCCGACCCA
CTGACCGCCAGAGAATTTGGTGAGGCCGAAATGGAAACAATTCTCGACGGCGACGACACA
GAACTGCCTGAGATAACTCTCCCAGGAGCACCCATCCCCGAGGGGCAGGTGGAGGAATGG
CAGAAGAGCCGAAACATGGGCTTTGTCATGGATCCCGTGATTGCTCGCGGAATTGCTTGG
TTCGATGCAAAGCCCGGGCAAGACGGACACGCTACAAAGGAGGATCGGACTCTGTATCCA
ACAACCACACGCGTCGGAGACGAGTGGAGCGACAACTACAAGGGCTTCGTGGCCGAAGCA
TTCGCAACGACACTTGGTCCCCAGGCCGCTGAAGATCTGACGCAACGATTCGCAGACTTC
ATAGAGAGCATCAAGCATTATCGAGAGGAGATCCGGAAGGATGTCGATATTGTCGAAGCC
GAGCCTCTGGATGACGCGTACAGTATTGCTCTGTGCATTTACGCCGTGTACTTTCACAAT
GGAGCCGCTGGGCAGTCAGGTTTCTTTGGTTCCCAGTCCACATACGAGGTTAGACAGCCT
CTGGTGGAATGGGTCAACGTCTCAGAACAGCAGCCCAGTGTCGAGCTGGGCAAGGAAGTC
ATGTCACAGACCCCGCCGGTCCAACATAAGGACTTTTGGAAGTACATTTACCAACTGGTC
TGTCGAGGTATGCTCAAACAAGCCTCTCATTGCTTGCATAACAGTGGAGCAGGGGAAGTC
GATCCTTCCTGTCAGGAAACACTCGAACAGACTATCGACATTCTCAGCAGATACCCCCAG
GGACCCGGAAACGTATCCTTTTACTTCCGACAATGGCACAACTCCATTAGTACCGTTCAG
AGTAAGCTGCTGAAGATCAACGACGCAAAGATCCAGAAGGGACTCACTACTCTGCTTCAG
GTGCTTGCCGGAGACGAAGACGCCATCATGGGCACGAATCACACCTGGTACGATGCTCTG
GTAACCCAGCAGCAGTACGTGGATCCCTGTGATTCTCGAATGAAGGGCTACTATGATGCC
GCTGTTGCCAATTATCCGGTGGACACTTTTACCGTCTGGGAAGCAGGGGCCAGCCACGCC
ATCAAGGGTTCATTGCTGCTGGCTATTGAAACCCTGGAGAACTGCGATTCAGTCATTGCT
GCTCTTGTGTCTAACATGTGCTACGATGCCGGTCTTCTCAATGGATATGGGGCTGCGAAC
CCTGCGGCTCTGCCCGATTACCATCTCACTAACCTCGCTTTGCAGTGTATTGGCTACGAC
AATCTCATCAACGTCGGAATCGAGGTTCTGCAGAAGCTGCGAGACGTTGCCCCTGCCCGT
CAGATTCTCAGTCTGCTGCTGCCTCGCCTACCCTACGATTCTGCCCGTGAAATCGACTGG
GCCATCAAGAAATGTAAGCAGAACGGACTAGTGGAAGTCGAGGCCGAGATTCTTCAGACG
CTCGCACAAAAGGCCATCCACAACAACAACAATCTCATGGGTCTCTGCATGTTTGCCAAG
AACGGCAACATTGCAGCTCTCCGATACCACTGCTGGAAGCTGTTTAAAAATGCTCTTGTG
GCCGAGTCTCCCGTGGAAGGAGATAAGAGCCTGGCAGACTACGTTAAGGATCCTGCCTCT
GTCTCTGACGTGCCTGCAGAGGTGGCCGAATGCATTGCTCCTTACGCTGTTCTGACAGAG
TACTTCAACCTGAGACGCTCTGGCCAGCTGGTCAAGTCGTCTGAGTATCTGCTGGCTCTG
TTTGAGTTCCCACTCCTGCCCACCGAGTACCTGGGTCTGCTGATCCACCAGCTCATCAAC
TACGTGTCGCCCATCAGTCAGCAGTTCAACTTCTCCACGTCACAGTTCATGACTCTGCTG
TCGGCATTCGACAAGTGGGACAAGTCCCAGGGCACTCCTGCATTCGAGCAAGGCGAGGAG
CTGATCAAGGATATGGTTGACCACTCCTCCGATCAGAATGACTGGCGCAAGACATTCAAG
ATCCATGAATTGGTGATGTCCGAGCTGCGCCTTGCTCGAACCAGTGTCGCTACCATGTCC
TCCCTTAAGGGACTGGGAGGAAGATAGAGGGGTGTGCAAGAAGACGTAGGCACTCAGTCT
GCATCTCCGAATACAGCCTCCACAAACAGTTAAATTAATCTTGTACATCGTCATAGATAG
CCAATACATTGTAGTATACAACT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F24563g_CDS-001

Protein length: 709 aa.
Product: Subunit of the Nup84p subcomplex of the nuclear pore complex
Gene: NUP85

>YALI0F24563g_CDS-001 MFSAPPATINGADNYISPDPLTAREFGEAEMETILDGDDTELPEITLPGAPIPEGQVEEW
QKSRNMGFVMDPVIARGIAWFDAKPGQDGHATKEDRTLYPTTTRVGDEWSDNYKGFVAEA
FATTLGPQAAEDLTQRFADFIESIKHYREEIRKDVDIVEAEPLDDAYSIALCIYAVYFHN
GAAGQSGFFGSQSTYEVRQPLVEWVNVSEQQPSVELGKEVMSQTPPVQHKDFWKYIYQLV
CRGMLKQASHCLHNSGAGEVDPSCQETLEQTIDILSRYPQGPGNVSFYFRQWHNSISTVQ
SKLLKINDAKIQKGLTTLLQVLAGDEDAIMGTNHTWYDALVTQQQYVDPCDSRMKGYYDA
AVANYPVDTFTVWEAGASHAIKGSLLLAIETLENCDSVIAALVSNMCYDAGLLNGYGAAN
PAALPDYHLTNLALQCIGYDNLINVGIEVLQKLRDVAPARQILSLLLPRLPYDSAREIDW
AIKKCKQNGLVEVEAEILQTLAQKAIHNNNNLMGLCMFAKNGNIAALRYHCWKLFKNALV
AESPVEGDKSLADYVKDPASVSDVPAEVAECIAPYAVLTEYFNLRRSGQLVKSSEYLLAL
FEFPLLPTEYLGLLIHQLINYVSPISQQFNFSTSQFMTLLSAFDKWDKSQGTPAFEQGEE
LIKDMVDHSSDQNDWRKTFKIHELVMSELRLARTSVATMSSLKGLGGR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG