YALI0F22421g

Overview

Description some similarities with uniprot|Q12415 Saccharomyces cerevisiae YOR110W (ohnolog of YNL108C) TFC7 TFIIIC (transcription initiation factor) subunit, 55 kDa Tau55
Locus type CDS
Locus tag YALI0F22421g

Location

Species Yarrowia lipolytica Positions 2966001..2967597
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1597 (nuc.)
Previous locus YALI0F22367g Next locus YALI0F22429g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F22421g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F22421gYALI0F22421g_mRNA-001YALI0F22421g_CDS-001

Nucleotide sequence

 

>YALI0F22421g
ATGGTGAAAACCATCTACATCACCCGACACGGGTTCCGAGCCAACTGGCTGACCGACCAG
CCCATTCCCCCGTCTCCCACCGGTATCGAGAGTGATCCTGCTCTTGCTGAGAAGGGAGTT
GTCCAGGCCAAGGAGCTAGGTGAATATCTCAAGGACATCAAGCCTCCCATTCAGCGTATC
TATGCTTCTCCTTTCTACAGATGTATCGAGACTGCGACTCCGACCGCCGATCATCTTGAT
CTTGCGATCTACCCCGAGGGAGGTTGCGGAGAATGGTTCAAGCGAGAGAGAAGCTCGCAC
CCCAAGCCTGCGAGTAACGCTGTTCTCAAGGGTTTTTTCCCCCGAGTCGACAAGAATTAC
AACAGCCTAGTGGTTGCTGGAGACGACGGAGAAGATGAGGCTGAACTGCACGAGCGAACC
AAGCGGTTTCTCAACGTGTTGATCGAGAAGCTCAACAAGGAGGAGCCCGAAATCGAGACT
ATTCTCATTGTATCTCACGCTGCTCCCCGAATTGCGCTTGGGCGAGCCCTAGTGGGTGAC
AATTCCTTGGACATTCGAACTGGTGTGTGTTCCTTGGACACCTTCGAGGTTGACAAAGAG
GGAGGACTCTGTGGAGAATGGAAGTTGAAGTCCTCTGGGCAGGTGGACTACCTGAGTGAG
GGAGAAGTTATGCATTGGGGCTTTGGTGAGTATGGAGATGTACAATGTGTAAATTGCATG
GTTGACATTCATGTTCATTACATGACTGACGCCATGTGTGATGCCATAACCGTGAATTCT
GTTCAACGACTAACCCAGACGTTCCTTTCGATCCTGGATCAGAGGAAGATATCAAGGCCC
GAAAGGCTGCTGCCGAGGCTTCTGCTGCTGCTGCTGCTGAAGGCGAATCCGACACAGTAG
TGAGTAAATAAGGCTTGTCACGTGCTCCCAAGCGTGAATATAGATGGAATCCCGCCACGT
GAGATACCACGTGAGAGTAATATAACTGTCTCGATCATGGATCACGAACTGATCACCATG
TCGGTAGTAATGTGCTGTCACGTAATATGCTCCCCCAGCAACTACTAACCCAGTCTGTTT
TCATTCCCCTGAACGTTCCTCCCATGTCCCGCAAGGCCGGGGCTTCTAGCAAGGTGTCTT
CCAACGCACCAGTTCAGATCTCTGGTCTCACTGAAGACAGGCCCTTCGTTAAGATCGGTG
ACAGTGCCTACGAGGGTCAATGGACCGAGCTGGTGGGCTCGGAAATGTACTTCAATGGTG
CTACTGGAGAATACGTTGGCAAGTCTAGGGATCGAATCATGCTGAAGCCCATGAGACTCC
ATCATAAGCAGGATGAGGTGATGCTTGAGCCCAAGAAGCGAGCCCATATTCTTGATCAAG
TTCACGCGATCAACGAAGAGCGAGCCAAGCAGGCTGGAGAGACTACCTCTGGGGCTCCTG
TTGACTCTGTTGACTCTGTGGATCTCGAGGTTGCTGCTGCTGCTGTCACTGCGGCCTCTA
TTCAGGATCCTGACACTGCTGCTTCGCTCGATGTCACCATGGAGGATGTTTAATGATGTT
TATTTATGTATGTATTTGTACAAATTGTGTTTTCAGG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F22421g_CDS-001

Protein length: 422 aa.
Product: Conserved hypothetical protein

>YALI0F22421g_CDS-001 MVKTIYITRHGFRANWLTDQPIPPSPTGIESDPALAEKGVVQAKELGEYLKDIKPPIQRI
YASPFYRCIETATPTADHLDLAIYPEGGCGEWFKRERSSHPKPASNAVLKGFFPRVDKNY
NSLVVAGDDGEDEAELHERTKRFLNVLIEKLNKEEPEIETILIVSHAAPRIALGRALVGD
NSLDIRTGVCSLDTFEVDKEGGLCGEWKLKSSGQVDYLSEGEVMHWGFDVPFDPGSEEDI
KARKAAAEASAAAAAEGESDTVSVFIPLNVPPMSRKAGASSKVSSNAPVQISGLTEDRPF
VKIGDSAYEGQWTELVGSEMYFNGATGEYVGKSRDRIMLKPMRLHHKQDEVMLEPKKRAH
ILDQVHAINEERAKQAGETTSGAPVDSVDSVDLEVAAAAVTAASIQDPDTAASLDVTMED
V*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG