YALI0F20372g

Overview

Description similar to uniprot|Q12136 Saccharomyces cerevisiae YDL153c SAS10 involved in silencing
Locus type CDS
Locus tag YALI0F20372g

Location

Species Yarrowia lipolytica Positions 2710183..2711898
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1716 (nuc.)
Previous locus YALI0F20350g Next locus YALI0F20383r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F20372g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F20372gYALI0F20372g_mRNA-001YALI0F20372g_CDS-001

Nucleotide sequence

 

>YALI0F20372g
ATGTCAGACATCTCGGACGTGGATGCTTTTGACCAGCAACAGGAAAAGCTCCTTTTGGAG
CAGAGTATGCGTGGAGACAGACGTCGTCACTATGACCACATGGAGATGAGTGACGAGGAG
GTTATGGGATTCAAGCCCAGCGACTCTGAGGATGAGGAAGACGACGATGATGAGATTCTC
GACCGAGAGGAAGAAGACGACGGAGAGGCCCAGGAGGCCTGGGGCAAGGGAGAGCTTTAC
GGTGCCGATGAGATCGAGGACGAGGAGGATCGAAAGCTGGAAGCTGAGGAGGCTCTCAAG
CTTCAGAAGAAGCAGGCCAAGCAGATGAAGGAGAGTGATTTCCTTGGAGAGTGGGCCGCC
GACGACAGTGATGATGAGGACGAGGAGGATGCAGATCTTGCTACAGCCGGCAAGGGTGTT
CGAGAGAGCATTCCTGTCAAGCCTATCGAGTCCATGTCTTCTAAGGAGCAGTATGATCAG
CTTGTTCGACTCAACCCCGAGCTGGTTCTCATGAACGCTGAGCTTGCCAAAGTGACTGAG
GAGATGGCTGCGCTGAACAAGGCTGAGGAGGATGAGGATGATGAGCCTGAAATCGTGGAG
ATCAAAAAGACGGCTCTTCGAACTTACATTGGAGTGCTGAACGCCTACTTTGCGCTGTTC
ATGGACTCCGTCAAGAACGGAAAAGCCAATATGAAAGATCACATCATCATGGAAGCCATT
CTAAAAGCCCGGGAAATGTGGCGAATGGCCCAGGAGATTGGTCTGCCCGAGGAGGAGGTT
GATGAGATGGCTTCTGATGAGGAGATGGTCTCTGAGGGTGCTGAGCTGATGGATGCTTCT
GCCGCCGAGAGTGACGTCTCTGACGATCTCGATCTGTCTCGATTCCGACGACGACCTGAA
GACGATTTCGAGGATGTGGAAGAAGTGGAGGAAGAAGTTGACTCTGACGACGAGCTTGCT
CTGCCCACCTCTTTCAAGGCCAAGAAGTCCAAGTCCAAGATCTCTGCTGTGCCCGACTAT
GGTGAGCATGCTATTAATGACGTTGATCAGGCTGACAAGGACCGACGAAAGCGAGATCTA
CGGTTCTATACCGCCAAGATCGACAAGCAGGCTCGAGGACGAGAACAGGAGGAGATTGAG
GGAGACGCTGACCTACCGTACCAGGACCGATGGTACGAGCGACAGCAGCAGCTCAAGGAA
AAACAGGCCGCCCACATCAAGGACTCGGGAGAGCATGATCTCTACGACTCTGGAGACGAG
GGAGGATCTGCTGATGACTACCAGGAAATGTCCTCCAAGAAGAGCGCTGGTGGAGATGAT
GACGAAGATGTGGATGAGTTTGTTGCTGCCCTCAAGGCCAAGAAGCAGCAGCGAAAGGCG
GAGCGAGAAGCCATGCATGAGGTCTACCTCGACGCCAAGAAGGGCAAGATTGACGTGGAA
AAGCTGGACGACAACGGAAAGCGAGCCATCAATTACCAGATTCTCAAAAACAAGGGTCTC
ACGCCACACCGAAAGAAGGAGAATCGAAACTCGCGAGTCAAGAAGCGAATCAAGTACGAG
AAGGCCAAGAAGAAGCTTGCCAGTACCCGGGCCGTCTACAAGCAGCCTACTGGTGCCTAC
GCTGGTGAGAAGACCGGTATCAAGAAGAACCTGGCTCGATCTACCAAGTTCCGGGAGTAA
TATAGATGCATGTTGTAATAGAGGTTTTGGATTTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F20372g_CDS-001

Protein length: 560 aa.
Product: Subunit of U3-containing Small Subunit (SSU) processome complex, putative

>YALI0F20372g_CDS-001 MSDISDVDAFDQQQEKLLLEQSMRGDRRRHYDHMEMSDEEVMGFKPSDSEDEEDDDDEIL
DREEEDDGEAQEAWGKGELYGADEIEDEEDRKLEAEEALKLQKKQAKQMKESDFLGEWAA
DDSDDEDEEDADLATAGKGVRESIPVKPIESMSSKEQYDQLVRLNPELVLMNAELAKVTE
EMAALNKAEEDEDDEPEIVEIKKTALRTYIGVLNAYFALFMDSVKNGKANMKDHIIMEAI
LKAREMWRMAQEIGLPEEEVDEMASDEEMVSEGAELMDASAAESDVSDDLDLSRFRRRPE
DDFEDVEEVEEEVDSDDELALPTSFKAKKSKSKISAVPDYGEHAINDVDQADKDRRKRDL
RFYTAKIDKQARGREQEEIEGDADLPYQDRWYERQQQLKEKQAAHIKDSGEHDLYDSGDE
GGSADDYQEMSSKKSAGGDDDEDVDEFVAALKAKKQQRKAEREAMHEVYLDAKKGKIDVE
KLDDNGKRAINYQILKNKGLTPHRKKENRNSRVKKRIKYEKAKKKLASTRAVYKQPTGAY
AGEKTGIKKNLARSTKFRE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG