YALI0F20350g

Overview

Description some similarities with uniprot|B6JXC9 Schizosaccharomyces japonicus SJAG_01056 Ribosome biogenesis protein Rix1
Locus type CDS
Locus tag YALI0F20350g

Location

Species Yarrowia lipolytica Positions 2707806..2709858
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 2053 (nuc.)
Previous locus YALI0F20328g Next locus YALI0F20372g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F20350g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F20350gYALI0F20350g_mRNA-001YALI0F20350g_CDS-001

Nucleotide sequence

 

>YALI0F20350g
AGCAGTACCAAAAATGACTACTCTGAAGACCATTTTGGGCGGCCCTCTGGCTCCCGACCA
TGTTTCTGACCTCTCCAACAACCTCGTGGTTGTTCTTCACCAAATTTACAACGCCAACGC
TCTGACTACAGCTGATGAGAACACCCTACACAAGTTTAGGGTGCGAGTGTCTGCCTTCCT
TAAGTCCAACGACTCCCGACAGCGGTGGTGTGGTGCCTTCCTGGCTCTGGCTGCCGTCCA
GAACTCCTGGGAGTGTCTCAAAAACCACGGAGCCACCTGGTTGGGCATGTTGATTCACAT
TCTTGAGCTGCCTGAGGCCCCTGCTACCTGGGAGATGGCGCTCCGAGCTAGTGCTGAGAT
GCTTGCCCTGGTGTCTCAGAAGACCGAGCTGACCCGTGAGATTGCTACTTCTCGAATTGC
TCCCCTTTCCAAGGCTGCTCTGGCTATTTTGGAGTCTCCTGAGAACTGTAGCCCTTCTAC
TGCCGCAGTTTTCGTCTCTGAGCTGCAGCGAGTCAACGTGGCCCACCCCGTGGGTTTCAG
ACCCCATTCCAAACGGTTCCAGTCTGCTCTTATCAGGCTCATTGCAACCTCCCCCGACTC
TAAACTCGTCCAGAAGGCCTGTGACGCTCTCACCGTGGCCCACTACTCGGCCTCCAACTT
TGGAGAAGCCGCCGAATGGAGAGAAGGATGCCTGTCTACCATCTCTGACATTCACATCGC
CGTCAATGCTCTCCTGGAGGGTCGAACTGATGACGCTCTTGCTTCCGTGGAGCAGACAAA
GTCGTGGGGATTCGATACCAAGTCCGGTTCCTCTCCCGCCGACATTTATGCCAGTGCTAA
GGCAATTGAAAACCTGTATACTCTTCTGACTGCATTTTTGAGCCAGCCCACTGCTGTGCC
CGTCAAGATTCCTGTTGGTCGTATCATTCCTCTATTCAACAGAGTCACCTCTCTGGCCCA
GGTCCACTTCAAGGCCCATGTTCCTCTGGTTGAGCAGAACCTGGTGCGATCCACATTCGA
ACGAATCAACATTGCCGCCATGCAGTCGCTTTCGGCTCTCATTAACACTGTTGGCGCTAA
CATTTCTGCCTACGTCGAGGACCTGCTTGAGACTGTCGACATGATCTCTGCTGACAACTC
TGCGGTGACCTTGGCTGCCCTGGATCTGCTCACAACCATCTTCAATAACGTCGGATACAT
TTCTGCTGGCTCTTCTGTTCAAGAGTACGTTGAGAAGGCCGTTTCCCAGGCTCTGGTTCT
CATCACTCCCGGCACCAATGTGTCTCAGGCCGGCCAGACTGAGATCCCCGATTACATCTC
CAAGTCTCATCTGTTTGAGTCTCCCATCTCCCATATCACCCAACAGACTGTCTACACATT
TCTTGAGGCCACCATGCTGGTATGTGACCTATCTGGACGATGTCGAGGACTCATTGACCG
AACTCTCCTGCTTTCGAAGCATGCTGCTCGACGGTCTGCTGCCGTCACTTCAGCGCTCAA
TCCCTCTATGGCTTCCAAGCACAGTATTCTAGCCATGGTTCAGCAGCAGTACCCCCGAGA
TACTTCCATTTCCCGATTTGTGCATCCTAGACTTCCTCCTCTGACTACCGAACGACGATA
CTTGCCTGTTTCCTCGTCTCTTGGAGAGGAAGAGGAGCTTGACGAAGAAATGGAGATTGA
GGAAGAGGAGGAAACCAGCGGAATTGAGCCTGTTTCTGCGTCTTCTGCGCCAGTCACTAC
CAACACATTTGCTTCTACTGCTTTCAGAGAACCTGAGAACCCTGTAGTTGTGGATGCTCC
ATTTGAGCCCCTGCCTGAGACGATGGCAGAACCTGTTCAGGCTATTGAGAGACCCTCTAA
TATCGAACCCACCACCGAATTTGAGGAAATTGAAGAGGAGGAAGTTGCTGAGAACCAGGT
CGACGATTCTGACGAGGAGATGGGCTCGGACTTTGAGATGCCCGCTTTGGACGTCGGAGA
CAGTGATGATGACGAGTAGGATTTAGACAGGATGCATGCAATAATTAGACGTTAACTATG
GTATGGAGACGTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F20350g_CDS-001

Protein length: 662 aa.
Product: Conserved hypothetical protein

>YALI0F20350g_CDS-001 MTTLKTILGGPLAPDHVSDLSNNLVVVLHQIYNANALTTADENTLHKFRVRVSAFLKSND
SRQRWCGAFLALAAVQNSWECLKNHGATWLGMLIHILELPEAPATWEMALRASAEMLALV
SQKTELTREIATSRIAPLSKAALAILESPENCSPSTAAVFVSELQRVNVAHPVGFRPHSK
RFQSALIRLIATSPDSKLVQKACDALTVAHYSASNFGEAAEWREGCLSTISDIHIAVNAL
LEGRTDDALASVEQTKSWGFDTKSGSSPADIYASAKAIENLYTLLTAFLSQPTAVPVKIP
VGRIIPLFNRVTSLAQVHFKAHVPLVEQNLVRSTFERINIAAMQSLSALINTVGANISAY
VEDLLETVDMISADNSAVTLAALDLLTTIFNNVGYISAGSSVQEYVEKAVSQALVLITPG
TNVSQAGQTEIPDYISKSHLFESPISHITQQTVYTFLEATMLVCDLSGRCRGLIDRTLLL
SKHAARRSAAVTSALNPSMASKHSILAMVQQQYPRDTSISRFVHPRLPPLTTERRYLPVS
SSLGEEEELDEEMEIEEEEETSGIEPVSASSAPVTTNTFASTAFREPENPVVVDAPFEPL
PETMAEPVQAIERPSNIEPTTEFEEIEEEEVAENQVDDSDEEMGSDFEMPALDVGDSDDD
E*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG