YALI0F18040g

Overview

Description weakly similar to uniprot|P87122 Schizosaccharomyces pombe CaCA sodium/calcium exchanger
Locus type CDS
Locus tag YALI0F18040g

Location

Species Yarrowia lipolytica Positions 2401823..2404347
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 2525 (nuc.)
Previous locus YALI0F18018g Next locus YALI0F18060r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F18040g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F18040gYALI0F18040g_mRNA-001YALI0F18040g_CDS-001

Nucleotide sequence

 

>YALI0F18040g
ATGGCGCAAATACGAGGCAAGTTGCGGAAGGCACTGGTGTCTCTGGCAGCCCTGTCTGTC
TTTGTGCTCTGTGTTCTGGCCATTCCTCGATCCCATTCCATCTCGGGCGCCAACAGACTG
CTTAACAAAAGAGACGTTCTCCCGGAAGATGAATGCTCCAACGTGCGACACATTCCACGA
GCTGACCAGTGCGAGTTCGTCAAGCTGCACTGCTCAGAAGACGAAAACACCTTCATCGAT
TACATGCAGGTCTACTACTGCTCGCCTTATGGACAACGACCCTTCCTGCTGATCATGCTG
CTTCTGTGGCTGCTGACATTGTTTATGACACTCGGAATCGCCGCCAGCGACTTTCTGTGT
CCCAATTTGGGCACCATCTCCTCACTGCTGGGCATGAGCGAGTCGTTGGCGGGAGTCACA
TTCCTGGCCTTTGGAAACGGATCCCCTGACTTATTCTCTACCTACTCGTCCATGAAGATT
GGATCAGGTTCGCTTGCCATCGGAGAACTCATTGGTGCTGCCAGTTTCATCAGCGCTGTT
GTCGTGGGAGCCATGGCACTTGCCCGGCCGTTCAAGGTCGCTCGAAAGTCGTTTGTTCGA
GACATTGGCTTCTTTACCGCCGCTGTGCTGTGCACTATGGCGTTTATTTCGGACGGAAAA
CTACGTCGGTCCGAATGCATTCTCATGCTCATCATCTACATGATCTACGTCGCCACTGTT
GTTTCCTGGCATTATCACTACACCAAGAAGCGCCAGGCATACCTTTCTGAGATCCGAGCG
CGAGAGTTCTTTCTTGATGCTGGACAAGAGGCTAATGTGATTGAAGATGAAGAGGTTGGA
GAATCTTCAAACTCGGTTCTGCAAGACGGTTTCGATAGAGAGGGATTCTTGTCTCTGACA
AACTCAGACGACGCTTCCAGAACCTCCAGATCTCCCGTCAAGAGTCCCCAGACACCTACA
GCAAATAACCTATCGCCCCACCCTAATCCCCATGCTCCTCATGGACGTTCTTTGTCTCCC
CACGGTCGTCTGCCTGATCGTGGACGGTCCCCTCTGGCCGTGGAACGTCTTAGAACCGAG
CACGCCCAGTCTAGAAGCTATTCACCTTTGGATAACAGATCCAGCCCTATTATCACCCCT
GTCCACTCTCATCCTTCTTCCCACAGTCATCGAAACGTGCCCCGTATCGTTACTCATAAT
TTGGATCTCGATGAGGACGAGGAAGAAGACAGATATACGGGGCTAACGTCCTCTATGCGT
CTGCCTACTCCCCTGCACACAACCCATCGAGTTCACGATTCTGCGCCTATCAGACCGTCT
CTGTATGGTGCCCTCGACTTTAGAGACCGAATCAACAATCTTAATGACGGTGAGGATCAT
CATGCTCACAACCATTCAGATTTGATTCACTCACCTCTGACTCGTCGATTAGACACTGAA
CTCTCACCCGTTCCCTCCTCCATCGAACCCATGTGGTCCAACGTCAAGGAGGTGACTGAG
AGTGCTTGGGTCGTGGCTCTGTTCCCTACCCTGACTGATTTCTGGTCCAAGTCGTTCATG
GGAATGGTGTCCAGTGTCATCACGGCTCTCCCTGTCTTCCTCCTATCCATCACTATCCCC
GTTGTGGAGTCTGTGGTTGAAGAGCCTCAGGTTCCCAATGCTTCCGAGCCCGTGTCTGCT
TATTCTGATGATGCTTCGTTTGTGTCCAATAACACTGCTACAACGAACCCTTTGTTGGCT
GCTGAGAGCGAAAACAAGGTACTTTATAATATGGCTCGACGAAACAAGATTCTTGTGATT
GTGCAGGCCATGCTGGCTCCTCCCGTCATCAACATTCTCATGCTAGATGAGGTCCCCGGA
GTATGGGGAACTATTTTCTGCATTATCTGTTCCATGACGCTAATGTGGCTGGCAGCCACT
AACTACGACAGAATGGTGCAGTCTGGCCAGTACCGCTTCCTCGCGTTCTTCGGCTTCCTG
ACTTCCATTGCGTGGGTGTCTCATATCGCGGATGTTGTGGTTGGTGTTCTCAAGGCTTTG
GGTGCCATTCTGGGCATTTCTGACCCCGTTCTGGGTCTCACTGTGTTTGCCTTTGGTAAC
TCACTGGGAGATCTGATTGCCAACACTACCATTGCCAAGATGGGATTCCCAATGATGGCT
CTCTCTGCTTGCTTCGGTGGCCCTCTTCTGAACGTTCTTGTGGGAGTCGGAGTGTCTGGT
CTCATTGTTACCAGCTCTCCTGGTAATGCAGTCAAAAACGGCAGCTACCACATTGAGATC
AGCGGGACTCTTATTATTTCTGCTGCCACGCTGTTTCTGACGCTGGTCATCACCATGGTG
ATGGTTCCCTTGGCTCGATGGCACATGACCAAGACAATTGGAGTGACCATCATCAGTATC
TGGACCATTTCCACAATTGTCAACGTCATCTTCATTTAATGCGCTCGCGCAAGCCTCCAA
AAGTCACGAACCACAGACATTTCCGTACTTATTTATACTAATTAATGATTAATGAGTGAG
CCATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F18040g_CDS-001

Protein length: 813 aa.
Product: Conserved hypothetical protein

>YALI0F18040g_CDS-001 MAQIRGKLRKALVSLAALSVFVLCVLAIPRSHSISGANRLLNKRDVLPEDECSNVRHIPR
ADQCEFVKLHCSEDENTFIDYMQVYYCSPYGQRPFLLIMLLLWLLTLFMTLGIAASDFLC
PNLGTISSLLGMSESLAGVTFLAFGNGSPDLFSTYSSMKIGSGSLAIGELIGAASFISAV
VVGAMALARPFKVARKSFVRDIGFFTAAVLCTMAFISDGKLRRSECILMLIIYMIYVATV
VSWHYHYTKKRQAYLSEIRAREFFLDAGQEANVIEDEEVGESSNSVLQDGFDREGFLSLT
NSDDASRTSRSPVKSPQTPTANNLSPHPNPHAPHGRSLSPHGRLPDRGRSPLAVERLRTE
HAQSRSYSPLDNRSSPIITPVHSHPSSHSHRNVPRIVTHNLDLDEDEEEDRYTGLTSSMR
LPTPLHTTHRVHDSAPIRPSLYGALDFRDRINNLNDGEDHHAHNHSDLIHSPLTRRLDTE
LSPVPSSIEPMWSNVKEVTESAWVVALFPTLTDFWSKSFMGMVSSVITALPVFLLSITIP
VVESVVEEPQVPNASEPVSAYSDDASFVSNNTATTNPLLAAESENKVLYNMARRNKILVI
VQAMLAPPVINILMLDEVPGVWGTIFCIICSMTLMWLAATNYDRMVQSGQYRFLAFFGFL
TSIAWVSHIADVVVGVLKALGAILGISDPVLGLTVFAFGNSLGDLIANTTIAKMGFPMMA
LSACFGGPLLNVLVGVGVSGLIVTSSPGNAVKNGSYHIEISGTLIISAATLFLTLVITMV
MVPLARWHMTKTIGVTIISIWTISTIVNVIFI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG