YALI0F17116g

Overview

Description some similarities with uniprot|P35187 Saccharomyces cerevisiae YMR190c SGS1 DNA helicase
Locus type CDS
Locus tag YALI0F17116g

Location

Species Yarrowia lipolytica Positions 2293865..2295319
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1455 (nuc.)
Previous locus YALI0F17094r Next locus YALI0F17138g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F17116g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F17116gYALI0F17116g_mRNA-001YALI0F17116g_CDS-001

Nucleotide sequence

 

>YALI0F17116g
ATGAAGAGGAAACACGACGGAGATTCGACAGACGACGATATATCTGGTCAACAGAACCAC
TCGTATTCGGAAGCGCATGTCTACAGCGTGCTGAGATCGGTGTTCAAGAAGGACGCGTTT
CGAGGATGTCAAAAGGAGATAGTGGAGGCGGCTATGAAGGGAAGAGACGCATTAGTGTTA
CTTCCTACGGGCCACGGCAAGTCATTGACCTTCCAGCTGCCAGCTGTTGCAGTTTCCAAG
GGCGTCACTATGGTGGTGAGTCCGCTACTAGCTCTTATGGCTAACCAGGTTCAGGGGCTT
AAGAAACTTGATATCCCTGCAGAGACACTGAATAGTGACGTCCAGGGTCACGACAGGCGC
ACAATTCTGCAAGATCTGGTCAGTGATAACCCTGAAACCCGCCTGTTGTACCTGTCGCCT
GAGTACATCTCAAACCAGGCATTTCAGCGCATCCTCAAGCGTCTTTACGATCAGGACTTG
CTGGTGAGGATTGTGATTGACGAGGCCCATTGTTGTGTGGAATGGGGTCACTCTTTCAGG
TCCACTTACAAAGAGCTGGGGTTCTTACGACAGGAGTACCCCAATGTTCCCATCACTGCT
CTCACAGCTACAGCATCCGAAAGCGTCCAGAAAGGAATAATCGACATTATGGGACTGGAC
GAGAAGAGGCTGGGAGTGTTCACCACGTCTATCAATCGCTCCAACTTGCATTACGAGGTC
AGATACCTCATCCCCGATTATCGCTTCACAGACTCGAACAGTATTCAGGAAGTGGTCATG
AAGGACATTCTGGAGTTTCTACAAGACTACAAGGAACGCAGACAGGCCCAGAAGTCGACA
TGTCCCGGTGCAGGCATTGTGTATTGTCGTACCCGAGCCTTGGTCGAGAAGGTGGCTCAG
AACTTGGGTAGGAAGGGGTATGGAGCTCATGCTTTCCATGCAGGCATGGATCTCAACGTC
AGAGAAGATATTTTAACCAAATGGACGGACTCGGAGCCCGGCTACGAAATTGTTGTAGCC
ACCATTGCATTTGGAATGGGTGTGGATAAGCCCAACGTCCGGTTTGTCATCAACTTTGAT
CTTCCTGACAACCTGGAGTCTTACTACCAGTTATCAGGTCGAGCAGGCAGAGACAACAAG
GGCGCCAGGTGTATCATTTACTATTGTTCAGGTGCCCATAGCCCTACTGCGAATGCCGAT
ATGAAAAGGTACTGTTCCAAGGCCAATCAATGTCGTCATGTTTCTATTGCTGAATATTTT
GAACCCCAGAAGACGCGAACCGTCAAGGAGAGAACCCAGTTGGCGAAAGAATACTGTGAT
TATGCTTGCGATGTGTGCAAAAATAAGCAGTTTGTGTCTTCTAGATACATGGCGATGGTT
AGAGCTGTTGACTCCTTGTCGGAGGGTGTATCTAGCACTCAGCCTAGTTGTTCCAGGAGT
TTAGCCATCAAGTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F17116g_CDS-001

Protein length: 485 aa.
Product: Conserved hypothetical protein

>YALI0F17116g_CDS-001 MKRKHDGDSTDDDISGQQNHSYSEAHVYSVLRSVFKKDAFRGCQKEIVEAAMKGRDALVL
LPTGHGKSLTFQLPAVAVSKGVTMVVSPLLALMANQVQGLKKLDIPAETLNSDVQGHDRR
TILQDLVSDNPETRLLYLSPEYISNQAFQRILKRLYDQDLLVRIVIDEAHCCVEWGHSFR
STYKELGFLRQEYPNVPITALTATASESVQKGIIDIMGLDEKRLGVFTTSINRSNLHYEV
RYLIPDYRFTDSNSIQEVVMKDILEFLQDYKERRQAQKSTCPGAGIVYCRTRALVEKVAQ
NLGRKGYGAHAFHAGMDLNVREDILTKWTDSEPGYEIVVATIAFGMGVDKPNVRFVINFD
LPDNLESYYQLSGRAGRDNKGARCIIYYCSGAHSPTANADMKRYCSKANQCRHVSIAEYF
EPQKTRTVKERTQLAKEYCDYACDVCKNKQFVSSRYMAMVRAVDSLSEGVSSTQPSCSRS
LAIK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG