YALI0F13805g

Overview

Description weakly similar to uniprot|B2VYZ5 Pyrenophora tritici-repentis inner centromere protein, ARK binding region protein
Locus type CDS
Locus tag YALI0F13805g

Location

Species Yarrowia lipolytica Positions 1860065..1863204
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 3140 (nuc.)
Previous locus YALI0F13783g Next locus YALI0F13827t

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F13805g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F13805gYALI0F13805g_mRNA-001YALI0F13805g_CDS-001

Nucleotide sequence

 

>YALI0F13805g
ATGTCTTTCGCAACGTCAGAGTGGGTCCAGAAGGAATTGGGCACCATTCGAGGACTGGTG
GATGACAACACGGACGACTTTTCCTATGCTGCTCGACGAGATTTGGAATGGATTAACGAA
CACATGGATGATGTCCTAGACACACGATTTAGGTGAGTACTTTGGAGGGGGTGAGAGGGA
GTTCAGTATGATGCCGGGTGATGAAGGGCGCATTTTTCGGAGAGCTGTGACGAAAGGGGC
TCTTTGTGTTCCGTTCGTTCAGAGACCCCCACAATCCATTCTGGACAGGAGTTGATCTGT
TGGCAATGGAGTCTTACTAACACAGCTTATCAACATTGCTACAGACTCCAGGACGTCTCA
AGGGCGCTCCTTCTCCCCGAAAAGCCCGTCTGATGGCTAGAGCGCCTCAGAGTGGACCTC
TGTCGCCCAAGAGCATGAACTCCATGAACAGCGGCTTCCGAAAGGCCGTGGCTCGAGAAT
TGGAGTACTCCAACAAACCGAACAATCGCGGCTCGAGATTGAAAGATCGCTCGGTTCCTA
GCACAAACCCATCGGCTTCTGCCTCTGCCGTCACCATCTTCTCCGACGGTTCACCTGATG
CATCTTTCCATTCCGCCGAGGATGTCACAGAGACTAGTGTCGCAAACAACAACATTGATA
CCAACAACACCGACAACATGAGTGAACAACCCTCTGATCACACAGAGCACGTCATTGCCG
ACACAAATACACTGCAGGTAGAGAAACACGAGCTTCCTGTACATGAGCTTCCCGTTCGTG
AGCTTCCCGTTCATGAGCTTCCCGTTCATGAGCTTCCTGTTCCTCCTCAGATGGAGCCCG
AGTCTGAGTTTACTTTCACATCGCTTCCTCCTCGGGAGCCTTTGACCGCTAAAACTCCAG
GTTCAGACACCGTCAAGCCCTCAGCCACCTCGCTACGAGTCCAGAGAATCCGTCAACATC
TCGAAAAGTCGTCCGGAGCAAAGTTCTCCTCCATGATCATAGATGGAGACGATGACTTTA
CCAAGAGTGCCGCTATCGGCGAAGTGGAGCCTTCTGACAAGAACGTTGCCCCTGCTGCTA
CTTCTGTCCCTGCAGTTACTCACATTGCTGCACCTACTCAAACTAGCCGTCAGCTCAACT
CACCCATCAAGCTGCGAAACCCTCACACCGGTTCTCCTTCCAAGATCGGATCGCTCTACC
CTCCCATTTCACCTTCGAAAAGCTCAAACATCTCTTCCAAGGAAAACTCACATGGACACT
TCTTTTCTGGTGCTATTCGAAGAGCCAAGATGCTCCTATTCCAGGACGACAAGAAGGAGA
ATGTCCCGCAGCATCCCCACACACCCAAGCAGCCCCCAGCCAATCTTTCGCGGCTCATGG
CTCCTACAGCTTCTTCCAGTGCTCGATCACCAACCCGGTCTCCTACTCGGTCTCCCAGTA
AGCTGTACCCCGAGATTCGGTCGCCCACAAAGATCCCCGAGCCTCGACAGCCTGCATCTC
CCACCCGAATTGCTTCCCCCGTCCGGGTGGCCAGTGGAGCCTCATCTGTGGCGTCACTCG
ACATTGGAACACCCCGTGTGTTGAGACAGCCTAGTGTCAAGGCTTCCACAAACTCCCGAA
CATCTCGGGTGCCAGTCCCAAAAGCTGCTGAGCGGTTCACCAGACGACAGGCCGAGATCC
GGGCCAAGGAACAGGAGACCAAGGAGAAGGAGGAACGAGCTGCTGCCGAGCGAGAAAAGG
AGCAGCTTGAAATGCGAGAGCTTGCCCGACAGGAGCGGGAGCGCAAGGAGGCTGCTGCTG
TAGCTGAGCGAGAACAACAGCGTCTCTTGGCTGCTGCCGAAGAACAGCGACGACGTCAGG
CTGCTGCCGAGAAAGAGGCACAACTGGAGAGGGAACGGAAGGAGCGTTCCGAGCGGGCTC
AGCGAGCTCGACGAGAACGACTCATTCGAGAGCGCCAGGAGCGTCTCGAGAAAGAGCGAA
TGGAGAGAGAGCTGAAAGAGAGAGAGGAAAGAGAGGAGCAGGAGCGAGAGGAAAGAGAGG
AGCAGGAACGCCTTGAGCGTGAGCGACTTGAGCAGGAGCGAATCCAAGAAGAGCTTCTCG
AGGAGGCCCGACTGGAGTCCATGCGATTGGAGAAGGAGAACATGCTTCGTCAGCAGCAAC
AGCAACAGCAACAGCAACAGCAGCGACAGTCTAGAAAGCGATCTTCTTCTGTTGGTGATG
AGGAGCAACAGCAGTCACAGAAGGTGCATCTTTCCAATATGCGAAAGCCTCTAAGCTCGT
CTACTCGAGTTTCTCAGAACCATCGAGTATCCTCTTCTATCATGGACTCGCCTCTTAACA
AGCCCACCGGTTCATTAATGCGACAGTCGTTGCAGCGACAGTACAAGACCGGCCAGATGG
GCCAGATGGCTCACTCTCGATTTGGCAAAGCTGTTGAGGGTGTTATGATTTCCAACGACA
CCATCAAGTTTGGATCTTCATCCACTAACGCTGCCACTGCAACTTCTTCATCGACTGCCG
CTGCTGCCGCCGCCGCTGCTGTTGCTGCCCCTCCCACTATCACGTCAGGTTCAGGTGTTG
CTACACCTCTGAAGCGAGTGGGACCCAACCGGCCTCTTCACACCACTCCCCAGCAATTCC
GATCGCAGCGAACTGGTGCTTTCTCTTCGTCCATGTCGTTTCAGGCCAAGCTGTTCAAAC
AACCTTCCTCCTCCACAGCACCTACCCCCGTGGCTTCTTCTATGGGTTCCACTTTAGTGT
CCGACCCCATTACCCCTGCAGCTTCTCATGTGCCCGTGACTCAGTTGCCCGAAATCAACT
CCGACTCTGAGGATGACGAAGGAGACGGAATTCTGCGAGACTGGGCCAACTCGCCCGAGC
TGCGATCGCTGTTGCTGCGACAGCAGGTGATGGATCCCGACCGAATCTTCGGCCCGCTGC
CACCTCTTCAGATGGAAGAGATTTTTGGCAATTCCAATAACGCTCGGGCAGCAAAGTTCC
GAGGCCGAAGCTCCTCCGCCAACTGGTCTCGAGATCAGCTTTCCCAGTTCGAAATCGACT
CGTACAGCGAGCAGATGGGCTACAAATAAGCACCATACTAACCCAAGTAGCTACATAAGA
CAATCTATGAATACCCTTTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F13805g_CDS-001

Protein length: 972 aa.
Product: Conserved hypothetical protein

>YALI0F13805g_CDS-001 MSFATSEWVQKELGTIRGLVDDNTDDFSYAARRDLEWINEHMDDVLDTRFSLSTLLQTPG
RLKGAPSPRKARLMARAPQSGPLSPKSMNSMNSGFRKAVARELEYSNKPNNRGSRLKDRS
VPSTNPSASASAVTIFSDGSPDASFHSAEDVTETSVANNNIDTNNTDNMSEQPSDHTEHV
IADTNTLQVEKHELPVHELPVRELPVHELPVHELPVPPQMEPESEFTFTSLPPREPLTAK
TPGSDTVKPSATSLRVQRIRQHLEKSSGAKFSSMIIDGDDDFTKSAAIGEVEPSDKNVAP
AATSVPAVTHIAAPTQTSRQLNSPIKLRNPHTGSPSKIGSLYPPISPSKSSNISSKENSH
GHFFSGAIRRAKMLLFQDDKKENVPQHPHTPKQPPANLSRLMAPTASSSARSPTRSPTRS
PSKLYPEIRSPTKIPEPRQPASPTRIASPVRVASGASSVASLDIGTPRVLRQPSVKASTN
SRTSRVPVPKAAERFTRRQAEIRAKEQETKEKEERAAAEREKEQLEMRELARQERERKEA
AAVAEREQQRLLAAAEEQRRRQAAAEKEAQLERERKERSERAQRARRERLIRERQERLEK
ERMERELKEREEREEQEREEREEQERLERERLEQERIQEELLEEARLESMRLEKENMLRQ
QQQQQQQQQQRQSRKRSSSVGDEEQQQSQKVHLSNMRKPLSSSTRVSQNHRVSSSIMDSP
LNKPTGSLMRQSLQRQYKTGQMGQMAHSRFGKAVEGVMISNDTIKFGSSSTNAATATSSS
TAAAAAAAAVAAPPTITSGSGVATPLKRVGPNRPLHTTPQQFRSQRTGAFSSSMSFQAKL
FKQPSSSTAPTPVASSMGSTLVSDPITPAASHVPVTQLPEINSDSEDDEGDGILRDWANS
PELRSLLLRQQVMDPDRIFGPLPPLQMEEIFGNSNNARAAKFRGRSSSANWSRDQLSQFE
IDSYSEQMGYK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG