YALI0F13057g

Overview

Description weakly similar to uniprot|E9EH55 Metarhizium acridum pre-mRNA-splicing factor CWC25
Locus type CDS
Locus tag YALI0F13057g

Location

Species Yarrowia lipolytica Positions 1751004..1752754
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1751 (nuc.)
Previous locus YALI0F13035g Next locus YALI0F13068g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F13057g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F13057gYALI0F13057g_mRNA-001YALI0F13057g_CDS-001

Nucleotide sequence

 

>YALI0F13057g
ATGCCTGGCGATTTAAATCTGAAAAAATCGTGGCATCCTGGTCTGCACAAAAACCAAGCC
GTGGTGCACGCCAAGGAGCAGGAGGCTCTGGAGGAACGGCGGCGAATCCAGGAGCGCCAG
AAGGAGATCAAGCAGCAGCGTGAACGAGACGAGCTTCAAAAGCTGCAGGAGATGGCTACC
GGCAAGAAGCGAGTTCAAAAAGTGGAGTGGATGTACCAGGATCCGACGGCGGTGGGTTCT
CAGCAGGCGTTCAATGAGAAGAAGGTGGATGCCAACTCCACCGACGACTATCTGCTTGGA
AAGCGACGGATAGACAGCATTGTCAAGCAAAAGGGCGATTTGGAGGCGTTCGATGACTCC
CTGGACCGGTTCCAGCCCAAGACGGACAAGTCTGAGTCCGCGGGGATTGTGCACAAGGTC
AAGGATGACCCCATGGTTGCAGTTCGACAAAAGGGACGCGAGCTGGGATACACTGACGAG
GCCAACGAGAGTGAACGACGAAGCAGACGAGAGCGATCCAGATCACGCGAGCGAGAGCGG
CGACGACCGCGTCGGAAACGAGAAGATTCACGTGACAGACGCAACCGACGAGATATGGAA
CGGGAAGGAGAGAGACGAAGGAGAAGACGTGATGGAGAGAGAACACGAAGAAGAGAGAGG
AACAGAGATCCATCTCCAAGCGTTTCTGATGATGATAGAGGATATAGACAATCTTCTAGG
GAGGAGAGAGATCGAAAGTCTTCTCGGGAAGAAGGAGGAAGATCTAGATCTAGAGACAGA
TACCGAAATAGATCTAGAGAGCGATACAGGGATCGGTCACGAGAAGAAAGGTCTAGAGAT
CGTTCGAGAGAGAGATTACGATCCAGAAGAGATCGAGATCGAGACCGGGACCGAGACCGG
GACCGGGACCGAGACCGAGACAATGTGCAGTCCAGTGGTCGCTCCAGTGGTCGGTCCAGT
GTTCGTTCCAGTGCTCGCTCCGAAAGATCTTTACGGGATAGATCTAGATCACGTGACCCT
GATCGTGACAGAGACTACAGGTCGCGATCGCGAGAGCGTGACAGTGGCGGGGGTCAAGGA
AGTGATCTTAGTGATGAGGTTGGCAATGGACGATCTGTGCTAGATGAACGCTCAACCGAC
ATGAATGCGTCTGATGGAAATTCTTCCCATGGCTACAGGGCCGATAATGAGTTTTCTCCT
TCTCGTTCGCCTGTAACTCGGTCTCATCGAGACAAACGCAACTCTTACCGTCCAGAATAC
AAGGATGAGGATGACAAGCGGTTTGCACAGCGTAAGGACAAGGAGAAGGAGATGAATGCT
CTTCCCAAGGGTCTTCAACAGATGCGAGCCAAGTTGTTGGCTTCCAAGAAGACGACGACT
GTGTCTGGCACGTCACAGACACCCACTTCTGCGCCTAGCGGCAGTCAGAGAACCCCCTCG
GCTGCTTCTGGCAGTTCTCCCACGGGAAAGGCTGCTACAGATGCCAAGTTGTCTGATCGA
CTGGCTCGATTGAAAGCCATGCAGGAAGATGCTAAGGCGTTGGAGGAGGAGCGGGACGAG
CGTCTGGCATCGAAAACCAAGCATGAGGAGGCTGAAAGGTTGCGGGATGCTCTTCTGCGA
CAGAAAAGCGCGCATTTGGGCAGAAGCGAGTTTGCTCGAGAGGAGGAAAGAAAGGATTTG
AAGTAACCACACTACCTGGTGCGAATGAAGCGACTGGGTCAAATCGTAGTAATACACTGA
TTTATTGATTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F13057g_CDS-001

Protein length: 562 aa.
Product: Conserved hypothetical protein

>YALI0F13057g_CDS-001 MPGDLNLKKSWHPGLHKNQAVVHAKEQEALEERRRIQERQKEIKQQRERDELQKLQEMAT
GKKRVQKVEWMYQDPTAVGSQQAFNEKKVDANSTDDYLLGKRRIDSIVKQKGDLEAFDDS
LDRFQPKTDKSESAGIVHKVKDDPMVAVRQKGRELGYTDEANESERRSRRERSRSRERER
RRPRRKREDSRDRRNRRDMEREGERRRRRRDGERTRRRERNRDPSPSVSDDDRGYRQSSR
EERDRKSSREEGGRSRSRDRYRNRSRERYRDRSREERSRDRSRERLRSRRDRDRDRDRDR
DRDRDRDNVQSSGRSSGRSSVRSSARSERSLRDRSRSRDPDRDRDYRSRSRERDSGGGQG
SDLSDEVGNGRSVLDERSTDMNASDGNSSHGYRADNEFSPSRSPVTRSHRDKRNSYRPEY
KDEDDKRFAQRKDKEKEMNALPKGLQQMRAKLLASKKTTTVSGTSQTPTSAPSGSQRTPS
AASGSSPTGKAATDAKLSDRLARLKAMQEDAKALEEERDERLASKTKHEEAERLRDALLR
QKSAHLGRSEFAREEERKDLK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG