YALI0F12155g

Overview

Description highly similar to uniprot|P25694 Saccharomyces cerevisiae YDL126c
Locus type CDS
Locus tag YALI0F12155g

Location

Species Yarrowia lipolytica Positions 1600784..1603417
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 2634 (nuc.)
Previous locus YALI0F12144t Next locus YALI0F12177g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F12155g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F12155gYALI0F12155g_mRNA-001YALI0F12155g_CDS-001

Nucleotide sequence

 

>YALI0F12155g
ATGACTGACAATACCGAAGAATCGAAGCGATTGATCGACAATTCCGGTGCTGCCGAGAAC
GCCGACGACTCTCTGGCCACCGCCATTCTGCGAAAGAAAAAGAAGGACAATGGTGAGTAT
TTCGGGTGGCGCGGCAACGTGGGTTATGTGGTGGTCTGCCCGCAGAAACATGAGACCCCA
GCAGAGAAAACCGCAAGCAAGCCAGCAAGCAATCAATCATACTAACATAGCTCTTGTCGT
GGACGATGCCACCAACGATGACAACTCCATCATCTGCATGTCGCCAGCAACCATGGATCT
GCTCCAGCTGTTCCGGGGCGACACAGTGCTGGTCAAGGGCAAGAAGCGAAAGGACACGGT
GCTCATTGTGCTGGCCGACGAGGAACTCGAGGACGGCGTGTGCCGAATCAACCGATGCGT
CCGAGGCAACCTGCGAGTCCGGCTCGGAGACGTGGTTTCGGTCCACCCCTGCCCCGACAT
CAAGTACGCCACCCGAATTTCGTGTCTGCCCATCTCCGACACCATTGAGGGTCTGACCGG
CTCGCTGTTCGACGTCTTCCTCAAGCCCTACTTTGTCGAGGCTTACCGACCCGTGCGAAA
GGGCGATCTGTTCACCGTGCGAGGAGGTATGCGACAAGTCGAGTTCAAGGTTGTCGACGT
CGACCCCCCGGAGTACGCCATTGTCGCCCAGGATACCGTCATCCACTGCGAGGGCGATCC
CATTGAGCGAGAGGACGAGGAGGGCAACCTCAACGAGGTCGGCTACGACGATATTGGAGG
CGTGCGAAAGCAGATGGCCCAGATCCGAGAGCTAGTCGAGCTGCCTCTGCGGCACCCCCA
GCTGTTCAAGTCTATTGGTATCAAGCCCCCCAAGGGTATTCTCATGTACGGTCCCCCCGG
TACTGGTAAGACCCTGATGGCTCGAGCCGTGGCCAACGAGACCGGAGCCTTCTTCTTCCT
GATCAACGGTCCCGAGATCATGTCCAAGATGGCCGGTGAGTCCGAGTCCAACCTGCGAAA
GGCCTTCGAGGAGGCCGAGAAGAACTCTCCTGCCATCATCTTCATTGATGAGATTGATTC
TATCGCCCCCAAGCGAGACAAGACCAACGGTGAGGTTGAGCGACGAGTGGTTTCCCAGCT
GCTGACTCTCATGGACGGAATGAAGGCCCGAGCCAACATTGTCGTCATTGCCGCCACCAA
CCGGCCCAACTCCATCGACCCTGCTCTGCGTCGATTCGGCCGATTCGACCGAGAGGTCGA
CATTGGTATTCCCGACCCCACCGGTCGACTTGAGATTCTGCGAATCCACACCAAGAACAT
GAAGCTTGGCGACGACGTTGATCTCGAGACCATTGCCGCCGAGACTCACGGTTACGTCGG
TTCCGATATTGCCTCTCTGTGTTCCGAGGCAGCCATGCAGCAGATCCGAGAGAAGATGGA
TCTGATTGATCTGGAAGAGGAGACCATTGACGCCGAGGTGCTCGACTCCCTTGGAGTCAC
CATGGAGAACTTCCGATTCGCACTCGGCAACTCGAACCCCTCTGCTCTCCGAGAGACCGT
TGTTCAGTCCGTCAACGTCACCTGGGAGGACATTGGAGGTCTCGACGGCATCAAGCAGGA
GCTCAAGGAGACCGTCGAGTACCCCGTTCTGCACCCCGAGATGTACACCAAGTTTGGCCT
GTCTCCCTCCAAGGGTGTGTTGTTCTATGGTCCCCCCGGTACCGGTAAGACTCTGCTTGC
CAAGGCCGTTGCCACCGAGGTGTCTGCAAACTTCATCTCCGTCAAGGGTCCCGAGCTGCT
GTCCATGTGGTTCGGAGAGTCAGAGTCCAACATCCGAGACATTTTCGACAAGGCCCGAGC
TGCCGCTCCTTGTGTTGTCTTCCTCGATGAGTTGGATTCCATTGCCAAGGCCCGAGGTGG
CTCTGTTGGCGATGCCGGTGGAGCTTCCGACCGAGTTGTCAACCAGCTGCTGACCGAGAT
GGACGGTATGAACGCCAAGAAGAACGTGTTCGTCATTGGAGCTACCAACCGGCCCGACCA
GATTGATCCTGCTCTGCTGCGACCCGGCCGACTGGACCAGCTCATCTATGTGCCTCTGCC
CGACGAGGCCGGCCGACTGTCCATTCTCAAGGCGCAGCTGCGAAAGACCCCTCTCGAGCC
CGGTCTGTCTCTGCAGGAGCTTGCCAAGTCTACCCATGGCTTCACTGGTGCCGATCTGTC
GTACATTGTGCAGCGATCTGCCAAGTTTGCCATCAAGGACTCCATTGAGGCTGCCATCAC
CGCCCAGCGGGAGGCTGAGGCTGCCGGCAACGAGGACGTGGAGATGGAAGACCCTGTTCC
TTACATCACCCGGGCCCACTTTGAGGAGGCCATGAAGACCGCCAAGCGATCTGTCAGCGA
CAGTGAGCTGCGTCGATACGAGGCCTATGCCCAGCAGATCCAGTCGTCGCGAGGAAACAT
TGGTTTCCGGTTCAGCGAGGACGCTGCTGGTGAGGCTGCCGCCGCCGACGCTGGTGCCGG
CACTGCTTTTGGTGCTGACCAGGAGGATGACCTGTACAACTAGACGTATGAGTTTGAGCA
TATAGCAATGACATGATAATATTAGGATGTATATATAATAGGATGTAGTGGTTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F12155g_CDS-001

Protein length: 815 aa.
Product: AAA ATPase; subunit of polyubiquitin-selective segregase complex involved in ERAD, putative

>YALI0F12155g_CDS-001 MTDNTEESKRLIDNSGAAENADDSLATAILRKKKKDNALVVDDATNDDNSIICMSPATMD
LLQLFRGDTVLVKGKKRKDTVLIVLADEELEDGVCRINRCVRGNLRVRLGDVVSVHPCPD
IKYATRISCLPISDTIEGLTGSLFDVFLKPYFVEAYRPVRKGDLFTVRGGMRQVEFKVVD
VDPPEYAIVAQDTVIHCEGDPIEREDEEGNLNEVGYDDIGGVRKQMAQIRELVELPLRHP
QLFKSIGIKPPKGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLR
KAFEEAEKNSPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARANIVVIAAT
NRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILRIHTKNMKLGDDVDLETIAAETHGYV
GSDIASLCSEAAMQQIREKMDLIDLEEETIDAEVLDSLGVTMENFRFALGNSNPSALRET
VVQSVNVTWEDIGGLDGIKQELKETVEYPVLHPEMYTKFGLSPSKGVLFYGPPGTGKTLL
AKAVATEVSANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKARG
GSVGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPL
PDEAGRLSILKAQLRKTPLEPGLSLQELAKSTHGFTGADLSYIVQRSAKFAIKDSIEAAI
TAQREAEAAGNEDVEMEDPVPYITRAHFEEAMKTAKRSVSDSELRRYEAYAQQIQSSRGN
IGFRFSEDAAGEAAAADAGAGTAFGADQEDDLYN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG