YALI0F03454g

Overview

Description similar to uniprot|P32074 Saccharomyces cerevisiae YNL287w SEC21 coatomer complex gamma chain (gamma-COP) of secretory pathway vesicles
Locus type CDS
Locus tag YALI0F03454g

Location

Species Yarrowia lipolytica Positions 487375..490233
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 2859 (nuc.)
Previous locus YALI0F03432g Next locus YALI0F03476g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F03454g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F03454gYALI0F03454g_mRNA-001YALI0F03454g_CDS-001

Nucleotide sequence

 

>YALI0F03454g
ATGTCAGCGCTCAGCTACAAGAAAAACGACGACATTGAGTCGGGCGCGCTGGACAAGATG
ACCGTGTACCAGGAGTGTCAGCGGGCGTTTGCCGAGTCGCCCATCAACGCGCGAAAGTGC
CGAAAGCTGCTGGCCAAGCTGATCCACCTGCTCACCATCGGCGAGACCTTCAGTGAGTTT
GAGGCCACGGGTCTGTTCATCGCCGTGTCCAAGCTGTTCCCCCATAAGGACCCGTCGCTG
CGGCAGATTGTGTATCTGGCCATCAAGGAGCTGGTGCCTCTGTCCAACAACGACGTGATT
ATGGTCACCTCGTCCATCACCCGAGACGTGCAGGGCTCGTCGGACCTGATCTACAAACCC
AATGCCATCCGAGCACTGGCGCGGGTCATTGACGGCTCGTTTGTGCAGGGCATTGAGCGG
CTGATGAAAACGGCCATTGTCGACCGTCACACCTCCGTGTCGTCGGCCGCCCTCGTGTCG
GCCTACCACCTGCTCCCCATCGCCAAGGACACCATTCGCCGATGGGCCGCCGAGGTCCAG
GAGGCGGTCACGTCGCAGAAGAACTTCCCGGCGGTGACCCTGCCCAACTACGCCCCCGGC
CCCGCCGTGCTGGCCCCCTACCACGCCCTGTCGCTGCTGTACGAGCTGCGAGCACACGAC
CGAATGGCCCTCATCAAGCTCATCCAGCAGTTCTCCGGCGCCTCGGCCCACCTGCAGTCG
CCCAACGCCAATGTCATGCTCATCCGATTCATCGCCAAGGCTGCCAACGACGGTGCCCAC
CGGCAACAGCTCGTGGCCCTCCTGGAACGATATCTCGGCCACAAATCCGACATGGTCGCC
CTCGAGGCCGCCAAGGCCGTGCTCACCCTCCGAGACGTGAGCCCTAAGGAGGCCGCCTCC
GCCATTGAGTCGCTGCGGGCCTTCCTGGCGTCTCCTCGAACCATTGCCCGGTTTGCAGCC
ATCCGAATCCTCAACCGGTTCGCGATGACCAACCCCGGCGCCGTGGCCGTGTGCAACGCG
GAGATCCAGCCCTTGATCACCGACTCTAACCGGTCCATCGCCACCTACGCCATCACGGCG
CTGCTCAAGACCGGCAATGAGGCCTCCGTCGACAAGCTGGTCACCCAGATCAGCGGGTTC
ATGTCCGACATCACCGACGAATTCCGAATTGTGGTCATCGATGCTGTCCGGTCGCTAGCG
CTTAAGTTCCACGCTAAAAAGTCTACCATGCTGCAGTTCTTTGGCAACACCCTTCGGAAC
GATGGTGGCAGTGCCCAATACAAGGCTGCCGTGGTTGCCGCGCTGTTTGACATGATCCGG
TACGTGCCCGACTGCAGAGACACCGCCCTCGGCATTCTGTGCGAGTTCATCGAGGACTGC
GAGTACACCGAGATTGTTGTTTCCGTCTTGCATACTCTCGGACAGGAGGGCCCTGCCGCC
GCCAACCCCACAGTGTACATTCGGTACATCTACAACCGAATCGTGCTTGAAAACGCTTTC
ATTCGAGCAGCTGCTGTCTCTGCACTGGCCAAGTTCGCGCTGGTGGATGACACCTCTGTC
AAGAAGTCCGTCAAGGTGCTGCTGGAGCGATCTCTGGAGGATGAGACCGACGAGGTGCGA
GACCGAGCTGTCATTGCGCTCAAGCTGCTCGAGTCTGGTGACCAGGCCCAGGCCAAGGCA
TACATTTCGCCCGAGTCGCGATTCTCTCTCCCCATTCTGGAGCACAAGCTGGCTCTGTAT
GTGACTGGGTCCGGTGCCGACTTTGACACGCCCTTTGACATGTCCTCTGTGCCTCTCATC
ACCGACCAGGAGGCCCGAGAGGCTGCTCTCAAGGCACACAGAGAGACCACCGAGGCCACC
CCTGTGGTCAACGGCGGAGCTGGAGGACCCACCCCTGCTTCTGCGGCTGCTGCCACCACC
GCCAACCTGGCGTCCAAGAGCAATTCTCACGAGGCCGCTATCCAGCGTGCCGAGAAGTAC
GCTGCCGAGCTGGCCGCTATTCCCGATCTGGCAGCCTTTGGCACTCCTCTCAAGTCTTCT
CTTGCGGTGGCTCTCACCGAGTCCGAGACTGAGTTTGTCGTGACTGCCATCAAACACATT
TTCCCCAGCCACGTGGTGCTGCAGTACGACGTGCACAACACGCTTCCCGACGCACAGCTC
AGCAACGTGTCAGTGGTGGCGTCTATTGAGGACGACAGCGAGGAGCTGGTGGAGGAGTTC
ATTCTTCCTGTGGACGAGCTTGGTCCCGATTCTCACGGCACCGTCTACGTGGCCCTCGAG
AAGACCGAGGACCATCTTGCTGTTGCATCGTTTGAGAACATTCTCAAGTTCACTCTCCAT
GACATCAACAAGACCACCGGCGAGGTGTCTGAGGACGGCGACGAGGACGAGTACCAGATT
GAGAACCTGGTGCTGGGTGCTGGCGACTACCTCGAGGGTGGCTTCATCGGCTCGTTTGAC
CACCTGTGGGACGAGCTGGCCAACACCGAGGCGGTTGACACTGCCACTCTGTCCGAATAC
AAGGGTCTGGAGGAAGCTGTCCAGTTTCTCATTTCACAGCTGTCTCTCACTCCTCTGGAG
TCGTCTGATGAGGTCACCTCGGCTTCCACACATACTCTGAAGCTGTTTGGAAAGACTCTG
ACTGGCGAGAAGGTGATTGTGCAGATCAAGATGGCCGCCTCGCAGCGAACAGGAGTTGTG
GTGCAGTGCAAGGCTAGATCGGGTGATGAGGAAGTGGCCGAGTTGGTTGCTGGATTTGTG
GGCTCGTTGTAAGTGCGTCTTTGTTAATGAGCGAACAGGCCAGATAAGTGGCCTTTGGTT
AGTAAGATATATAGTGAAGGATTATTGCAAGTTTGGTGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F03454g_CDS-001

Protein length: 924 aa.
Product: Gamma subunit of coatomer, putative

>YALI0F03454g_CDS-001 MSALSYKKNDDIESGALDKMTVYQECQRAFAESPINARKCRKLLAKLIHLLTIGETFSEF
EATGLFIAVSKLFPHKDPSLRQIVYLAIKELVPLSNNDVIMVTSSITRDVQGSSDLIYKP
NAIRALARVIDGSFVQGIERLMKTAIVDRHTSVSSAALVSAYHLLPIAKDTIRRWAAEVQ
EAVTSQKNFPAVTLPNYAPGPAVLAPYHALSLLYELRAHDRMALIKLIQQFSGASAHLQS
PNANVMLIRFIAKAANDGAHRQQLVALLERYLGHKSDMVALEAAKAVLTLRDVSPKEAAS
AIESLRAFLASPRTIARFAAIRILNRFAMTNPGAVAVCNAEIQPLITDSNRSIATYAITA
LLKTGNEASVDKLVTQISGFMSDITDEFRIVVIDAVRSLALKFHAKKSTMLQFFGNTLRN
DGGSAQYKAAVVAALFDMIRYVPDCRDTALGILCEFIEDCEYTEIVVSVLHTLGQEGPAA
ANPTVYIRYIYNRIVLENAFIRAAAVSALAKFALVDDTSVKKSVKVLLERSLEDETDEVR
DRAVIALKLLESGDQAQAKAYISPESRFSLPILEHKLALYVTGSGADFDTPFDMSSVPLI
TDQEAREAALKAHRETTEATPVVNGGAGGPTPASAAAATTANLASKSNSHEAAIQRAEKY
AAELAAIPDLAAFGTPLKSSLAVALTESETEFVVTAIKHIFPSHVVLQYDVHNTLPDAQL
SNVSVVASIEDDSEELVEEFILPVDELGPDSHGTVYVALEKTEDHLAVASFENILKFTLH
DINKTTGEVSEDGDEDEYQIENLVLGAGDYLEGGFIGSFDHLWDELANTEAVDTATLSEY
KGLEEAVQFLISQLSLTPLESSDEVTSASTHTLKLFGKTLTGEKVIVQIKMAASQRTGVV
VQCKARSGDEEVAELVAGFVGSL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG