YALI0F02409g

Overview

Description weakly similar to uniprot|O13961 Schizosaccharomyces pombe SPAC1786.03 Nuclear envelope protein cut11
Locus type CDS
Locus tag YALI0F02409g

Location

Species Yarrowia lipolytica Positions 370227..372233
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 2007 (nuc.)
Previous locus YALI0F02387g Next locus YALI0F02431g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F02409g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F02409gYALI0F02409g_mRNA-001YALI0F02409g_CDS-001

Nucleotide sequence

 

>YALI0F02409g
ATGGTCAGCGTATCGCGAATGATGCCGGTGCCTAGTGCCCGGTCGGAACCCATCCCATAC
CACAGTCTCATGACGCTGGTGATGAAATACAGATTTGGCAACATGTATCGGCTGCTGTTC
ACGCTTTGCTATCTGATTGGAATTGTGATTGAGGTGCTACGACGGGTGTTGGCGTCGTCA
GATGACTCCTCATGGTGGTGGTGCCTGTTACCTCTACGAGCCTCTTGGCTACTACTGGGT
CTGTTGCCGGTCGTCATCATGAGAAAGGCCGACCTGCACATACGGGAGCTGCCGTACCTG
TCACTGGCTGCTGAGATCTGTGATCGTATCTTCTCAACCACGTTTGTCGTCACCTTCGCA
GCATACATGCTGTCAGCATCCATGTTCTTCGGTTACTACACCAAGGCCATGTCGACAGAG
AACTCGGCCTTCACCACCCGAGCTACCCCGTTGACCCAGCCTATGCTAAACGAGAATGCC
CTTTACCTGATGGTGTTCCCAATTGCTCTGTCTCTGGCCCAGTCGGTGCTCCACATCGCC
AAGGACATTGACAAGCTCATTGTACAGCCTGTGACCGAAGAACCCGCTCGACCCATGGAG
AGACTCAAGCACCAGATGACCGACATTGTCAAAAATGCAGGCACTCTGTCGGCGGGCTTC
TCTCTGGTCGTCTACCCCATCATGTTCTACCCCAGCTTCCGCACCAAGATCTGGAACATC
ACTATGTCACTGTCGGGCTACTGGTACGGACTCAACAAGGCACAGACCCCCGAGGTGTAT
CCCGGTCTACGATTCTCGCTGGTCATGGACACTTTCATCGCCTCAGCAATCCTGTTGCTT
CTGTGGAATCTCGTCAACACCACCTTCTCCATCTACATGTCTCTGGGACCTCTACGCAAG
GGCGAAGGAATCAGTGAATCGTCTCCCGACAGAAACGGAACTTTGGTATCGGGACTGCGA
GACTCCAAGCACGTTTACCCGCAATCGGTGGCATTCCAGGAGCTGCTCTACGTGGCCCTC
TTCTCTCCACAGGGACGAGTCCAAATGTTTGAAGATCTCAGCAGAGATCAGAGCATGTGG
GTCGAGGTATACGCCGAGTGCAAGAAACAGATTGTAGCTGTGACCGAGGCAGCCAATTCG
TCCATTGGTAAAGTCAAGTCCAAGCCGAAGCCCAACCCCTTTGACTACAAGGGCAAGCAG
CAGGCCGACCTGGTGTCTACGGCCCGTCCCGAGGCTCCCCAAATCGTCATCAGAAGGGAC
AACATCTTCAAGAACCCCAAACCGGATTTCCCCAAGGTGGTTCAGGTGTTCCAAGACAAG
GAGGCTACTACTTCCAACCAATTTTCCGAGTCTGTGTCTGAGCTCTTCAAGACGTTCACC
GAGCTTCTGGGCGGCTACCAGACCCAGATGATTCAGCTCCTCAGACTTCCAATTGGCGCT
CCTTTCAGACAGACCATCCAGAGACGATGTAAGCGAATTGTGCCTGAGCCATTACTCACT
TGCAACGCCATCATGGCTCTGTCATTCCTAGTCTTCCACTCCATCGACGAGGACCGGTAT
GGAAGCGTGCAGAGAACCATTCCCGAGATTCTGGACACTTTGTGCCAGTCCATGGTTGCT
CTAGACGAGCTGCTGCGAAAGCCCCCTGTGAGCTGGACCGACGTCAAGTTCAACCCTGAC
GATATCGACGAGGAAATGTCCGATATCGTTTTCATTCGGTCTTCGGCCCAAACGGCATTT
TCTCGAATCGTGTTCCGGTTCGAGCAGTGGATCGAGGGTATGGATCTGACTCCTCTTGTC
CAGCGAGAGATCCGCAAGCTTTATAGCTAGGCTGTAACTACGGTACGAGTAGCTGGAGGA
GTGCTGCTTGTAGCTACTGTAGTCGAACTGTACATACAGCAGTCGAAGGAGGACATGTCT
AAGGACAGGTGGAATAAGGGACTTTTTGAATAGGGCGGTCAAACATACATAGACACATCG
AGTCATAAATTAATGCAACCAAGGCCG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F02409g_CDS-001

Protein length: 610 aa.
Product: Conserved hypothetical protein

>YALI0F02409g_CDS-001 MVSVSRMMPVPSARSEPIPYHSLMTLVMKYRFGNMYRLLFTLCYLIGIVIEVLRRVLASS
DDSSWWWCLLPLRASWLLLGLLPVVIMRKADLHIRELPYLSLAAEICDRIFSTTFVVTFA
AYMLSASMFFGYYTKAMSTENSAFTTRATPLTQPMLNENALYLMVFPIALSLAQSVLHIA
KDIDKLIVQPVTEEPARPMERLKHQMTDIVKNAGTLSAGFSLVVYPIMFYPSFRTKIWNI
TMSLSGYWYGLNKAQTPEVYPGLRFSLVMDTFIASAILLLLWNLVNTTFSIYMSLGPLRK
GEGISESSPDRNGTLVSGLRDSKHVYPQSVAFQELLYVALFSPQGRVQMFEDLSRDQSMW
VEVYAECKKQIVAVTEAANSSIGKVKSKPKPNPFDYKGKQQADLVSTARPEAPQIVIRRD
NIFKNPKPDFPKVVQVFQDKEATTSNQFSESVSELFKTFTELLGGYQTQMIQLLRLPIGA
PFRQTIQRRCKRIVPEPLLTCNAIMALSFLVFHSIDEDRYGSVQRTIPEILDTLCQSMVA
LDELLRKPPVSWTDVKFNPDDIDEEMSDIVFIRSSAQTAFSRIVFRFEQWIEGMDLTPLV
QREIRKLYS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG