YALI0E13904g

Overview

Description similar to uniprot|P47057 Saccharomyces cerevisiae YJL036w Sorting nexin 4
Locus type CDS
Locus tag YALI0E13904g

Location

Species Yarrowia lipolytica Positions 1674133..1675523
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1391 (nuc.)
Previous locus YALI0E13882g Next locus YALI0E13926g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E13904g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E13904gYALI0E13904g_mRNA-001YALI0E13904g_CDS-001

Nucleotide sequence

 

>YALI0E13904g
ATGGAATGGCAAGATGAAGCGGGGCCTTCGAGTGGTCCTTCTAACGGCATAGCGTCATCG
TCCAACGGACCCTCGTCGCACTCAGACACAGACCTGTATCGAAGCGACTACCATGCGCTC
GAAAATGACAAGACTTATATCGACTCTGTGGTGAGCGATCCGGCCAAAGACCTGGATGGA
ACCCAGAACGCCCACATCACATACCTCGTGACGACCAAGTCCAACAACACGCAGTTCTCG
AACAAGGAGTTCCGAGTCCGACGCCGGTTTTCGGACTTTGTCTTCCTTTACAACTGCCTG
AACAACGAGTTCCAGGCCTGTGTGGTGCCCCCTCTCCCGGACAAGCAGCGTCTCGAGTAC
ATTCGAGGGGACCGGTTTTCGACAGAGTTCACAGTCAAGCGAGCAGCATCTCTGACACGG
TTTCTCTCACGCATAGCACATCACCCCCTGCTCAAACGGTCCAAATACTACCACGCCTTT
CTGGAGTCTGGCGAATGGAACGCATACAAGAAAAACAACATTGCACGAGGAGGACTGATT
GTGGACGGAGGAATTTTGGACGGACTGTCCGACACGCTGGTCAGTGCATTCACTCGACCC
CCACAGACGGCCCAGGAGTTCCAGGAGGTCAAGGAACGAATCGACCGCCTGGACGTGTGT
GTGTCGCACATTGAAAAGGTACTGGCTCGGTCTGTGCGTCGACAGTCAGATCTGGTCATG
GACTACCAGGACCTGTCGCAGCACGTGGGCCAGCTGGAGCATCTGATTCCTTCATTGGAA
CAAGAGTTTTCCAAGTTTGCTGGAGGCCTGCAGGCGCTGGCCATCAACACAGCCGTGCTC
AAGGAGAAACTTGATACCGACTACGTGTCTTCTCTCAAGGATCTCATGCACTATCTTGTG
TCGGTCAGAGCTTTGCTCAAACAACGAGACCAGAAGCAGGCAGACTACGAGGGCCTGGTG
GAGTACAATGAGCGAGCTGTGGCCGAAAGACAGGCGCTGGTGTCTGGTGGAGGGAACGGT
ATTCTGCGAAACAAGCTGGAGGACATTCGGGGTATCAACCATGAGTTTTCACGACGGGAA
CGGCTGCAGAAGCTCGAGGGCCGGATCGAGAGTCTCACGGGCGAGACGAATCTGGCCAAG
ACCACGTCCGAGGCCTTTGACGAGCAGACCAAGCGCGAGATTAACACTTTCGACAAGATT
CGATCCGGCGAGATGAAGGAGACTCTCAAGACTCTGACCTCTGGACAGGTGGATTTCTAT
GCGGCTTTGGTCAAGGATTGGGAGGCTATTTACGATGCTCTTGGAGAGTGACGGTATTCA
AGTGCTTACCTAACGATAATAATGATAATGATAATTCGAAGCCATTGTGCACTGGTTTAT
TTTGATGATGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E13904g_CDS-001

Protein length: 437 aa.
Product: Sorting nexin, putative

>YALI0E13904g_CDS-001 MEWQDEAGPSSGPSNGIASSSNGPSSHSDTDLYRSDYHALENDKTYIDSVVSDPAKDLDG
TQNAHITYLVTTKSNNTQFSNKEFRVRRRFSDFVFLYNCLNNEFQACVVPPLPDKQRLEY
IRGDRFSTEFTVKRAASLTRFLSRIAHHPLLKRSKYYHAFLESGEWNAYKKNNIARGGLI
VDGGILDGLSDTLVSAFTRPPQTAQEFQEVKERIDRLDVCVSHIEKVLARSVRRQSDLVM
DYQDLSQHVGQLEHLIPSLEQEFSKFAGGLQALAINTAVLKEKLDTDYVSSLKDLMHYLV
SVRALLKQRDQKQADYEGLVEYNERAVAERQALVSGGGNGILRNKLEDIRGINHEFSRRE
RLQKLEGRIESLTGETNLAKTTSEAFDEQTKREINTFDKIRSGEMKETLKTLTSGQVDFY
AALVKDWEAIYDALGE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG