YALI0E13233g

Overview

Description similar to uniprot|P33755 Saccharomyces cerevisiae YBR170c NPL4 nuclear protein localization factor and ER translocation component
Locus type CDS
Locus tag YALI0E13233g

Location

Species Yarrowia lipolytica Positions 1592993..1594957
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1965 (nuc.)
Previous locus YALI0E13211g Next locus YALI0E13255g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E13233g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E13233gYALI0E13233g_mRNA-001YALI0E13233g_CDS-001

Nucleotide sequence

 

>YALI0E13233g
ATGGTGAGTACTGCAGACACAAACAGCTGTGGAATTGTGCCCAGACTAACTCAGATCCTG
CGATTCCGGTCCAAAAAGGGCACTCTTCGAGCGGAGGCCCAGCCCACAGATCTCTTCGAT
GTGGCGTTCAAGAAGCTCACTGAAGACCTGCCAGACATCGATCCCGCCACAATCACCCTT
GCCACGTCACCCACAGGCAAGCAGGAACCGGCCTCTCGTCTTCTGGGTAAAACCGTCCAG
AAGCTGGGGCTTAATCATGGTGATATGCTGTTTGTCAGCTACACAGACTCGGCCCCACGA
GCTGCTGTGGAGGCTGTGACGGCCGAAACCGCTCCCCAAATGACCGCGGCACACATTCGA
GACGCCACCAAACAATTGCCTGTCGATGACTATCTCGAGAAACAAGATGGAAAGATCAAG
CGACAGCTATCAGCACTCCAGCAGCGAAAGTTTGGATCCAGAGGTATGGGCGAAGACACT
CTTCCAGTCGACCCCTGGGACGAGGAGTATCTCAAGGAGCAGAAGATTAAGCATATGAGC
TACCATGCCTACGTCAAAAAGCTCAATTCGCAGGCGAACAAGAAGAATGGAGGCGGATAC
ATTGCCCCCCTGAATGTGTCGGATTTCGGAGTGTCCAAGAGCTGTACAGGAGCCCATGCT
CCCTGGCCCGAAGGAATCTGTTCCCGATGCCAGCCCTCGGCTATTACTCTGCAATCACAG
CCTTTTCGAATGGTTGATCATGTGGAGTTTGCAGAGTCAGGTATGATCAACAGCTTTATT
GAGCCCTGGCGTCAGTCCGGAACACAGCGTATCGGCTGGATGTACGGCCACTACGAACCC
TACGAACTTGTGCCTCTCGGCATCAAGGCTGTTGTTGAGGCAATCTATGAGCCTGCCCAG
AGTGGTGAGTATGACGGTATCACCATTACTGAAATTACCCAGGCAGACGGTCAGCCTCAA
CCTCCTCATATTGCCACTGCCGAGGCGTGTGGACTGGTGCCTCTGGGCGTCATTTTCACC
GATCTGGTTGATGCTGGCAATGGAGATGGTTCTGTCATCTGCAAACGACACGCGGATTCG
TACTTTTTGTCGTCTCTGGAGGTGGCATTTGCTGGAGCCATGCAGGCACGTTTCCCCAAC
AAGTCGCGGTGGTCACCAACGTCTGAATTTTCGTCCAAGTTTGTCACTGCCGTGATTTCC
GGTAACCCCAAGGGCGAGATTGATGTATCGTGCTACCAGGTGTCTGAGCAGTGTGAGGCT
ATGGCCCGCGCAGATCTCATCGAGCCCAGCATCAACCCGTCGGTGCTGCTGGTCAAGGAA
GCTACAAAGACACGATATGTTCCCGACGTGTTTTACAAGAAGAACAACGAGTACGGACGG
ACGGTGCTCCAGGGAGCCAACCCACAGCTTCCTGTAGACTACATGTTGGTTACACTGACC
CATGGCTTCCCCCAGGACCCCAGGCCTTTGTTCTCATCCGGCCTGTCGTCTTTCCCTGTG
GAGAACCGAGAGCTGATTGGAGTGACCCAGAGCCCCCAGGCACTAGGAAAGGCTCTGGAC
TCTGGGTCTGCTGGAGGAGCTGTTTCCAACTTCCATCTGTTGAGCTACATTCAGTCCATG
GGTGTGCTATCTGCTGAGGAGTTCCAGTTGTTGGCCAAGGTGGCTACGGAAAAGAAGGAT
GAGGACGTGAGTCGGTTGGTTGCCAGTGAGGGCTGGAACAATCTACTGTTGATCATCCAG
TGATGGACGAGTATATAATGGGTGCATTACAATTTCTATCATGCCGACTCGTGTCGTACA
GTACGAGTCCAAGTATCATGCACTACTTGTAGCTACTGTACAATCAAAGTCCGATCCTTA
GCGGCGAGTAAATTGCAAGTCTAGCAGCATACAGTAATGATGTCTTGGATGTCTGATCAT
GACGTCAACTTTATCGCTCGAAATACCATTTTTGTAGTCCGTTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E13233g_CDS-001

Protein length: 564 aa.
Product: Substrate-recruiting cofactor of the Cdc48p- Npl4p-Ufd1p segregase, putative

>YALI0E13233g_CDS-001 MILRFRSKKGTLRAEAQPTDLFDVAFKKLTEDLPDIDPATITLATSPTGKQEPASRLLGK
TVQKLGLNHGDMLFVSYTDSAPRAAVEAVTAETAPQMTAAHIRDATKQLPVDDYLEKQDG
KIKRQLSALQQRKFGSRGMGEDTLPVDPWDEEYLKEQKIKHMSYHAYVKKLNSQANKKNG
GGYIAPLNVSDFGVSKSCTGAHAPWPEGICSRCQPSAITLQSQPFRMVDHVEFAESGMIN
SFIEPWRQSGTQRIGWMYGHYEPYELVPLGIKAVVEAIYEPAQSGEYDGITITEITQADG
QPQPPHIATAEACGLVPLGVIFTDLVDAGNGDGSVICKRHADSYFLSSLEVAFAGAMQAR
FPNKSRWSPTSEFSSKFVTAVISGNPKGEIDVSCYQVSEQCEAMARADLIEPSINPSVLL
VKEATKTRYVPDVFYKKNNEYGRTVLQGANPQLPVDYMLVTLTHGFPQDPRPLFSSGLSS
FPVENRELIGVTQSPQALGKALDSGSAGGAVSNFHLLSYIQSMGVLSAEEFQLLAKVATE
KKDEDVSRLVASEGWNNLLLIIQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG