YALI0E13167g

Overview

Description weakly similar to uniprot|P43589 Saccharomyces cerevisiae YFR005c SAD1 SnRNP assembly defective
Locus type CDS
Locus tag YALI0E13167g

Location

Species Yarrowia lipolytica Positions 1583909..1585299
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1391 (nuc.)
Previous locus YALI0E13145g Next locus YALI0E13189g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E13167g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E13167gYALI0E13167g_mRNA-001YALI0E13167g_CDS-001

Nucleotide sequence

 

>YALI0E13167g
ATGGAAAAAAGAACCCACCAAGAATCGTCGCTGTACCTCGACACAGTGGACCGATCGAAA
CTCGACTTTGACTTTGAAAAGGTCTGCTCCGTGTCGCTATCGCCCACCAACGTCTACTGC
TGCCTGGTATGTGGTAGATACTTTCAGGGAAGAGGCAAGTCAAGCCATGCTTACTTTCAC
TCCATCAACGACGACCACCATGTGTTTCTGAACATGGAAACATACGAGGTCTACGTACTT
CCGGAGGGGTACAAGGAGACGTCACGTGATCTCGATGACATCAAGTCCGTGGCCAATCCT
GTGTATGAGGAGTCTCAGATCAACAGGCTGGATGTGGACAAGACGAGCTACACACTGACC
AACAAGGTGTATCGACCAGGGTACATTGGAATCAACAACATCAAGCACAGTGACTACGCC
AATGTGGTTGTCCAACTTCTTTCACACACAAAGCCTCTGAGAAACTACTTGCTGTTGCAC
CCCAAAAGCGAGTCTGCCATTGTGTCAGCATTATCACAGATATCCAGACGCATTTGGAAC
CCACGGGCTTTCAAGAACCACGTGAGTCCACATGAGTTGGTGAACCTAGCCGAAAAGCTG
TCACAGGGCAAGTTCTCCGCCAACTTCCAGGCTGATCCCTGTCAGTTTCTGGTCTGGTTG
TTGGTACAGACACATCTGGGACTAGGAGGAAGTTCGAAGCCGGGATCTTCGTTGATTCAC
CATATCTTCCAGGGAAAATTGAACAAGACGACGGAAAAGCTGAGCGAGCGGGAGGTGAGT
GGAAAGTCCGTTTTCGATGTCAAGAGCTCGAAAACAACATGTATTCCGTTCCTGCTGCTG
ACTCTCGACTTGCCAGCGGAATCCGTGTTCAAGGATGGAGATAACGATACCACCCTTGAA
CATGTGCCATTAACAAGGCTGCTAAAAAAGTACGATGGTGTAACCTGTGAGGAACTAGCC
GGGGAGAGAAACACATACCAGATTGTGTCATTACCCAAGTATCTCATTTTGCATTACAAG
CGATTCTCCACCCTTCCAGATGGAACCAAGGAGTACAACGGTACGATTGTCAACTTTCCA
CTCAAGGGACTGGACATGGCTCCTTACACCAAGGGACTGGAAGGCAAGTACAATCTCATC
ACCAACATCACTTGCGAGGGAGGAGACAAGAAGGAGAAGGAATGGAGTGTCCAGATGCGT
GATGGGGGACGAAAAACGTGGGTGGATGTCCGAGATCTGGTTGTTTCTGATGTTACCGAG
CTCGGACAGGACTCCTTGTATTTGAAAGAGGTATATATTCAGGTTTGGAAGAGGGTTAAC
TAGGCTGACTGCGTAAAGAGAGCACTAGTTCCCCATGTACAGTAAAGCATTATTAATACA
CGATACACATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E13167g_CDS-001

Protein length: 441 aa.
Product: Conserved hypothetical protein

>YALI0E13167g_CDS-001 MEKRTHQESSLYLDTVDRSKLDFDFEKVCSVSLSPTNVYCCLVCGRYFQGRGKSSHAYFH
SINDDHHVFLNMETYEVYVLPEGYKETSRDLDDIKSVANPVYEESQINRLDVDKTSYTLT
NKVYRPGYIGINNIKHSDYANVVVQLLSHTKPLRNYLLLHPKSESAIVSALSQISRRIWN
PRAFKNHVSPHELVNLAEKLSQGKFSANFQADPCQFLVWLLVQTHLGLGGSSKPGSSLIH
HIFQGKLNKTTEKLSEREVSGKSVFDVKSSKTTCIPFLLLTLDLPAESVFKDGDNDTTLE
HVPLTRLLKKYDGVTCEELAGERNTYQIVSLPKYLILHYKRFSTLPDGTKEYNGTIVNFP
LKGLDMAPYTKGLEGKYNLITNITCEGGDKKEKEWSVQMRDGGRKTWVDVRDLVVSDVTE
LGQDSLYLKEVYIQVWKRVN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG