YALI0E12617g

Overview

Description weakly similar to uniprot|C4QXC3 Komagataella pastoris F-Box protein
Locus type CDS
Locus tag YALI0E12617g

Location

Species Yarrowia lipolytica Positions 1533977..1535777
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1801 (nuc.)
Previous locus YALI0E12595g Next locus YALI0E12628g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E12617g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E12617gYALI0E12617g_mRNA-001YALI0E12617g_CDS-001

Nucleotide sequence

 

>YALI0E12617g
ATGAGTGAGTCAAACAGCTCTCACGACAAGGATCTGCTCAATCGAGACATTCTCATCCAT
CACGTCTTTCCTCTGCTCTCCCCGGAGGACATCAAGAACGTTTCTCTCACCAACAAACAA
CTACACGAGGCAGCAAACTCACCCTCCGTTTGGCACGATCTGTATCTCAAAACGTTTGGA
GAAAACCCATTGACCACCCACAAGTGGCCCGAAATGTACCAGGTGCGATCCCGAAGCGGG
CTCTTCACTTGGGGCCAAAACGGCCGAGGAAAGCTCGGTCTCAACGAAGCCCATGTGCCC
AGTGACCACAAGACACTTCGAGGCATCTGCAGACCGACTCAGGTGAGCGGTCTGGGCTCC
CTCGTGGTTTCGGACATCTCGGCGGGAGGTTGGGGCTTTTTGCTACTTGATATCGAGGGC
CATGTCTACGGCATTGGAAGTATTTCCGACCGAGGAAGAGCTCCTTATGTTCCTGGACGA
GTCACCAACAATCCCAATACCTACCCCTTCAGAAACCCTCGAGGAGCTGGTCTATTCGGA
GGAAGAGGGCCGTTCCCTTTTCGAGTTGGAGGTCTGATTCGTCCCGACATTCCTCCTGTC
ACCAACAATGATGCTCAACCCACTCCCCCTCCTCAGCCTGGTTCTCGACCTGCTCCTCCT
GCAACCACAGGAATGTACGGAGGAGATAACAGCGACCCTCAAACAGACGCTCCTCCTCTT
GGGCATGGAATTGGACCCGCTGTGCCACCCAGAACCACTGCTGAGTCAGATGCCATCATG
ACTGCTTCGAGAGACGCTGCTCAGAATGACAAAAAAACCAACGAGGGCCCTTCCGAGGAA
GATGTCCGAAAGCACTGGCTACTCAAGTTCCCCGACGACAAGCACCCCAAGGTGGTGGCT
ATCTCTGCTGGTCGATCTCGAGCTCTGGCTCTGGACGAAGAAAATAACATCTGGCAGTGG
GACAAGACGTTCTACGACCAGGCTGCCCGCCTTGAGTTCTCGTTCGGAGACAAGCGCATT
CTCAAGATCACCGGAGGCTGGGAAAAGGCCGCTGCTGTTGTTGAGGATGTCGGTCTGGTT
GTGTGGGACGGAATCAGTCTGACCAACGTGGCTGCTGTTCGACCCGTGGAACATGAGACT
GTTCCCAACACCAAACTCACCGGTGATGGGGAGATTGTCGATGTTGCTGTTGGTCGAGAC
GCCATTGTTTACCTTGACAGAAAGGGAGATGCGTACACTATCGACATCCACAAGCTTGCC
AGTGGACCTGTTCGTCTGGATGGGTTCATGAACAAGCTCAAGCTGTCCGACTGGAAGGTC
GATGCCAAGTTCACCAAGCTTACCGGTAACTTGACCCATTTCATTTTCATTTCTGACCGA
GACGATGTGTACTTGACTCCTCCCGATACTACTCTCACAGCTGGTACAGAGCCTTCCATC
ATCCCTGAGCTCCAGAAGAAGGGATGTATTTCTGTGGCTGCTGGAGATCGCCACTTTCTG
GCACTCATGAAGGGAGGCAAGATTCTGTCTTGGGGATGTGAGTCTCAGGGCTGTGGAGAT
CTTGGTCTCGGACAGGCTCAGGAGTTGATCAAGAACGATGGAGCCTCTGAGCGAGGCATG
GATCTTGTGCTTTCCAAGCCTACCCAGATCCGTATGGAGGGCCATGCTCTTGCCATTGCT
GCAGGAGGCTGGCAGAGTGCTGCCATCATCACCACCGATGACATTGAGCACGATGAGAAG
CAGTAGCCGTGGCAACAGCAGTATATAGTTGTGTATTTAATAAATCTTTTTACATTCACT
A

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E12617g_CDS-001

Protein length: 582 aa.
Product: Conserved hypothetical protein

>YALI0E12617g_CDS-001 MSESNSSHDKDLLNRDILIHHVFPLLSPEDIKNVSLTNKQLHEAANSPSVWHDLYLKTFG
ENPLTTHKWPEMYQVRSRSGLFTWGQNGRGKLGLNEAHVPSDHKTLRGICRPTQVSGLGS
LVVSDISAGGWGFLLLDIEGHVYGIGSISDRGRAPYVPGRVTNNPNTYPFRNPRGAGLFG
GRGPFPFRVGGLIRPDIPPVTNNDAQPTPPPQPGSRPAPPATTGMYGGDNSDPQTDAPPL
GHGIGPAVPPRTTAESDAIMTASRDAAQNDKKTNEGPSEEDVRKHWLLKFPDDKHPKVVA
ISAGRSRALALDEENNIWQWDKTFYDQAARLEFSFGDKRILKITGGWEKAAAVVEDVGLV
VWDGISLTNVAAVRPVEHETVPNTKLTGDGEIVDVAVGRDAIVYLDRKGDAYTIDIHKLA
SGPVRLDGFMNKLKLSDWKVDAKFTKLTGNLTHFIFISDRDDVYLTPPDTTLTAGTEPSI
IPELQKKGCISVAAGDRHFLALMKGGKILSWGCESQGCGDLGLGQAQELIKNDGASERGM
DLVLSKPTQIRMEGHALAIAAGGWQSAAIITTDDIEHDEKQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG