YALI0D26994g

Overview

Description some similarities with uniprot|P36070 Saccharomyces cerevisiae YKL125W RRN3 Protein required for transcription of rDNA by RNA polymerase I
Locus type CDS
Locus tag YALI0D26994g

Location

Species Yarrowia lipolytica Positions 3590680..3592856
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2177 (nuc.)
Previous locus YALI0D26972g Next locus YALI0D27016g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D26994g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D26994gYALI0D26994g_mRNA-001YALI0D26994g_CDS-001

Nucleotide sequence

 

>YALI0D26994g
ATGGAAAGTCCAGTAGCATTGGAGTCGAGAGGGCTCTCGTTGAAGAGAAAGAGGGTGGAT
TCGCCCCAAGTGATGGCTTTAAAGAAACCAAGGGATGAGGGAGGAGTGCTTCCTCAGGAT
GATGGCAAACTGACTACTTGTCCAGAAACAGGTGACCTATCTGCAGGCGTTTACAAGGCG
TTCGTTAAGAATGCCCTAGATGAAGTTGAAAAGGTGAGTTATGCTGTCTTTCCCATTTAT
ACATCCCCCCTTACGAACCGTCGTCTTCGCCTCTCATGTTCTCTTTTTCTAACCTAGCAA
AACTACAGCCCACTCGGCAAGTTGACCGACCAGATTACTAAAAAGGCCGACTCGCCCGAC
GCGCTGTCCAACGACCAGCTCACACACATGATCCAGGCGCTGTCCATTGAAATCAGCCGG
CTGGACTCCCCACGATGCTCCAAGCTCATCAACGGCGTGGTGCGTCTACATCTCGAAAAA
CGACAGCCGTCCCAGGCGCTTACAGACACATACTACCGGTTTCTCGCAGTGCTCGTCTCC
GCCGTGCCACGATGGTGGTCCGACGTTGCGACTCAACTGGTGGCCGACTTCACTCTAGAC
GATGCCTCTGCCCAGCATTCAGCACTGCGATACATGATCAGCATTACACCCACGTCAGCT
ACTCTGCTGCAAGGAATGCTGCTCGATGCCTTCCCCAATAAAATGGATACCACCGCGCGA
CTGTGCAACTTCATTCGGAACGCCCTCATCACCACCGAGTACTGTCCTGCGCTAAGAAAT
GCAGTGTGGGGCATGGTTGTGGAAAAGAGTGTGCAGATTGACGTGGAACTGCAAGACGAA
CTGGACGAGATGGATGAAGAAGAGCTCTTTGACGCTGGTCTTCTCGACGCTGAGGACCCC
GAAGTGGTAGATCTTGATGACGCCACTGATATCAAAGAGGGAGAAGAAGACGGTAACGAC
GGACTGGCTCTGGGAGACTCAGATGATGAACTCGACGATGACGATGACGATCATATCGAA
GTCAACGATGCCTCGTCTGTCGGAGAGCTCCTGGCCAAGCTCGACGGAATCGTGTCTCTT
CTTCTCATGCATGTTGGAGGAAAGTTCAACGATGGCCCCGAGGAAATCACCACGGAAACA
GTGTCCATGTATGCATCTCTCATCAACGTGTTCAAGACGTATCTTCTGCCTACGCACAGA
ACCCGTTTTGTGCAATACATTGTCTTCCAGGCGTCGCAAGCATGTCCTGAGTTCATGGAC
GCCTTTCTTGCTTCTCTCATCGAGATCACTCTGTCGTCTGGAGAAGGCATGGACAAGCGG
TCCAAGGCCATGCAATACATTGCATCTTACATTGCACGGGCTAAACATCTCTCCAAGGCC
CAGATTGTATTTGTGGTGAGCATGCTGACCGGCTGGATCGACAGATATGTGTCTGAACGA
GAAGCCGAAGTCAATGGCGTGCCTGGCTCCATGGAGCGATTCAAGACATTTTACTCTGTC
GTCCAAGGTCTCATGTACATCTTTTGTTTCAGAAACGAGATGCTGCGACTGGACTCTGAT
GCTCCCGAGGGCGACTCAGTTTGGGAGTGCAAGCTCGACAAGTTCTTCCAGCGAATCATC
ATGACCAAGTTCAACCCTCTGCAATACTGCAACCATTCCGTGGTCGCCATGTTCGCCAAG
ATTGCCCATCACCACGATGCAGCCTACTGCTTTACTATCATCGATGAGAACAAGCGAGGC
ATCGTGCGAAAGGATCTGCATGATAAGAAGGATAAGACCATGCCCCCCCGTGCCTTCATG
GAGGGAGCTGCCACTCTGTTTGATGGTCCCCAGAAGGAGTTTACTCAACTCGAGGGCTAC
TTCCCCTTCGATCCTCTTCTTCTCAAACGGTCCAGAAGTGTTCTCGGAGACCTCTACATT
GAATGGAGTGAAGTTGCTGAGGACCTTGACTCGGACAGTGAAGATGGAGACGAGAGTGAC
GGAGGAGACCATGAAGATGACATGGAGGAGGACGTGGAGGATGATGACGAGTAAAGTGCC
GATAACCAACCCAATGCATCTCAGCAAGATGTTCACCTGCATCACTCTACATCTTGCTAA
CATTATAGACGGTCCACACCAGGTCCACTTTTTTAAACTAAGCTGCTATCCAAGCAGAAT
ACATTGATGTTATAACG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D26994g_CDS-001

Protein length: 650 aa.
Product: Conserved hypothetical protein

>YALI0D26994g_CDS-001 MESPVALESRGLSLKRKRVDSPQVMALKKPRDEGGVLPQDDGKLTTCPETGDLSAGVYKA
FVKNALDEVEKQNYSPLGKLTDQITKKADSPDALSNDQLTHMIQALSIEISRLDSPRCSK
LINGVVRLHLEKRQPSQALTDTYYRFLAVLVSAVPRWWSDVATQLVADFTLDDASAQHSA
LRYMISITPTSATLLQGMLLDAFPNKMDTTARLCNFIRNALITTEYCPALRNAVWGMVVE
KSVQIDVELQDELDEMDEEELFDAGLLDAEDPEVVDLDDATDIKEGEEDGNDGLALGDSD
DELDDDDDDHIEVNDASSVGELLAKLDGIVSLLLMHVGGKFNDGPEEITTETVSMYASLI
NVFKTYLLPTHRTRFVQYIVFQASQACPEFMDAFLASLIEITLSSGEGMDKRSKAMQYIA
SYIARAKHLSKAQIVFVVSMLTGWIDRYVSEREAEVNGVPGSMERFKTFYSVVQGLMYIF
CFRNEMLRLDSDAPEGDSVWECKLDKFFQRIIMTKFNPLQYCNHSVVAMFAKIAHHHDAA
YCFTIIDENKRGIVRKDLHDKKDKTMPPRAFMEGAATLFDGPQKEFTQLEGYFPFDPLLL
KRSRSVLGDLYIEWSEVAEDLDSDSEDGDESDGGDHEDDMEEDVEDDDE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG