YALI0D25652g

Overview

Description weakly similar to uniprot|Q07350 Saccharomyces cerevisiae PRP11 RNA11 YDL043C Subunit of the SF3a splicing factor complex, required for spliceosome assembly
Locus type CDS
Locus tag YALI0D25652g

Location

Species Yarrowia lipolytica Positions 3415171..3416506
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1336 (nuc.)
Previous locus YALI0D25630g Next locus YALI0D25674g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25652g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25652gYALI0D25652g_mRNA-001YALI0D25652g_CDS-001

Nucleotide sequence

 

>YALI0D25652g
ATGGACATGCAAAATCGAGTGGGATCGAAAAAAGGAGGTGAGTATGGAGATGCGAGGAAG
GCTCACGTGATGAACACATTCAGCTGGACATGATTGGAGTTCTGTGTAGCAGTGTTAGAC
ATGACTCTGATGATCACTGAACTGTTTTCTTGCTGCTACTCAAACTTATGTCTGGTAGCC
ATTCAGGAGCTGTTCACCATGATGCAACCTGTTGATTCTGGCTTTTTTTTTCATGCGGAT
GGAGCCATCTCGCTGGAGATGGCCTGGGTCGTCTAACGTATTTGAGAGCTGGACATGACA
CATTCTGTCCTGTCCGCCCCTACCGTGCTAAAACGACCACCGTCTATCGGGTCATTCACT
AGCAATACTAACTCAGGCGGCGGAATGGCCTCTGAATCTCAAGCCAATCTTCACCGACGA
GAACGGCTCCGAAAACTCGCTAGTGAACAGCTCGACATTTCCAAAGACCCATACATTTTC
AAGAACCACCTGGGCTACTTTGAATGTCGCCTCTGCCTCACCAGTCATGTGACCGACGGT
AGCTATCTCTCCCACACCCAAGGCAAGCGGCATCAACAAAACTTAGCCAAGAGAGGAGCT
CAGAGTCGAGATGGACCCAGGGAGCAGAACCGGGAACTATCCGGAGCCAACAAAATCCAC
ATTAAGAAATCTGCGCTCAAAATCGGCCGTCCCGGTTACAAGATCACCAAGGTGAAGGAC
CCGCTGACCAAGCAGCTGGGTCTGCTTATGCAGATCAACTTTGCAGAGATTGGCACGGGA
GTCACCCCAAGATACAGATTCATGTCTGCGTTCGAGCAAAAGGTGGACGTTCCGGCAGAC
AGAAGGTTTCAGTATCTGTTGATTGCGGCTGAGCCGTATGAGACAATTGCTTTCAAGATT
CCTGCGAAGGAGCTGGATCAGCATCCGAGTAAGTTTTGGAACCATTGGGATAAGGATCGC
AGGGATTATGTGTTGCAGGTCATGTTCAAAGCAGAGCGACAAGCATAATCAAATACGAGC
GAGTGAGTGTTCGAAATCGCCCGAGTACGAGCCAAGCGAGGCGCTGGGCACCGACACCGA
CATTCTTCGTGCTTTCACTGTTTCTGAACAACCATCCAGCTTTACTTTCTCTGCACATCT
TCACCTCTGCGCTCTTTGTTTCAGCGTAAGGGTTCTGAATGCGCCTCTGACCTTCTCTTC
GGCTCCAATCAATGGATGAAGGGAAGCATCGAGGGGAATCACGTATCATGGTGCATGGAA
GGGTACAGCGGACATGTGGAAGACGCATGGTTCATCTGAGCCTGTATATTTATCAATGTA
TATTAGATTTTGGTGG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25652g_CDS-001

Protein length: 223 aa.
Product: Conserved hypothetical protein

>YALI0D25652g_CDS-001 MDMQNRVGSKKGGGGMASESQANLHRRERLRKLASEQLDISKDPYIFKNHLGYFECRLCL
TSHVTDGSYLSHTQGKRHQQNLAKRGAQSRDGPREQNRELSGANKIHIKKSALKIGRPGY
KITKVKDPLTKQLGLLMQINFAEIGTGVTPRYRFMSAFEQKVDVPADRRFQYLLIAAEPY
ETIAFKIPAKELDQHPSKFWNHWDKDRRDYVLQVMFKAERQA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG