YALI0D25520g

Overview

Description weakly similar to uniprot|U3H042 Schizosaccharomyces pombe SPAPB17E12.06 Sos7 Kinetochore protein
Locus type CDS
Locus tag YALI0D25520g

Location

Species Yarrowia lipolytica Positions 3401870..3403596
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1727 (nuc.)
Previous locus YALI0D25498g Next locus YALI0D25531g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25520g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25520gYALI0D25520g_mRNA-001YALI0D25520g_CDS-001

Nucleotide sequence

 

>YALI0D25520g
ATGTCTCTATCTATCGACAAATACAAGCGGATTTACCGCAAGAACCCACTTCCCGAGGTG
GCTGACTACGCGGCCGAGCTGCAGCAGTCACGTGAGCAGTTCAAGAACGTCAAGTTTGCG
TTTTTAGAGCAGGAAAACAAGGAAAAGTTCATTCGGTCGTTGACGACGAATGACAGGGTG
CTGGAACAGGCTGATATTGATGCCGTAACTGCTGAGTCAGCCACCGGAAAGGAGCAGCTT
CGGGTAGAGAAGCGCAAGGTGGAAGAGATTAGCAAGGAAGTGGAGGAGTTGGCTCAGGAG
GTGGTAGCCAAAGACGGAGCCTTGGAGGAACAGAAGGAGAAAAAAAAGAAGCTCCAGAGT
GAGTTGGCGGATGTGCAGAAACAGGTGTCAGCTCTCCAGGATGAAAGCCATAATCTCCCA
CCCCACCTGGCTGAAATGATGGGTCAATCTTTACAGGAGTTGGAAATTCAACTTGAACAG
AGTAAAGCGGAATTGCAGACCAGTAAAGAGATGGTGACTCAGGTCGAGGAAGAACTGGTG
CCACAACTGAATCAGGAGTTGGCGGACAAGAAGGCCGAGACGGGGGCCTTACAGGGAGAT
CTCCTGCATGCTACTGCAGAGGCTGATAGAGCTGTGGCCGAGAGAGAGAGGTTGAAGGGG
AAATACAATGACAAGGAGCGGTTGATTTTGTGGCTCAAGAGTTCATTGGAGGTGATGGAG
CAGCAGTAGTCAGATCAGAGGAGATATGGTGAGACGCATAGACTTAGTCCGGGTGTCTAC
ATATGGTCACGGGTGTTCCGGGTAACCACCAAGGGATTCCTGATGTCTGAATGTGACCGT
TGTCTGTGACCGTTGCCTGCGACTGTTTGTCTATGACCGCCAGCCTATGCTACCGGTATC
TCGCTCCGCCTATTTTGTCTACTTATGGCCATCCGTTCAGGCCAGTGCGGCAACGGTTCA
GACATCCGGTTCTAGATTTCAATCTGTTCATGGATATTTTGTGAAATGCACCATGATTAG
CGATGTACTGCCATGATGTGTTGTGAAATTTGTTGGAATCACGTTGAAGTTGCTTGAGGA
GTGTTGCTATCGAGAATCTGAAGTATTGCTTTCTAGCTTCTCAGGTGAATTTCCCAATTT
GGTGTCTTCTATTGACTTCAGAAACACTTGTTCAATGTCTGTCCCTAAACAACGACCTTT
TCAGGTTTCTGCCACATCATCGAGATATGTCACGTCTTTCTCTAGTCTCATACAGTTCTT
GCAGTTAACATAACCATATTCTGCACTGAACTTGAGTTGATATCTGGCAGTATGTCTACT
ACTTGAACATTTAGTTGACGTCTGTTCGGACCAGATCATGATCAGTACCGATGGCACGTG
ACAGTTCCGTCTGTGTAACTAGATGATGCATCAGCAGCTATTCTGGTGCTTCTTCCAGTT
CATTTTTCCTATTATCACCACATGATTACGGGGTTCACTAAGACCATCTGAGGAAATCTG
GCCGGTGGAATAGTACAACAGCTAGGGTCACACGAGTAAATGTATTGACATCTGAAGTCA
CATGGTCAGCTGTATCTGCATAGAGATGCCGTTAAAATGGTTTCATCTGGCGAAACCACT
CATAGTGAGTCGTTTTATGGCTCTGTCTACGGTGACTTACTAGTAGATCCATTTGGTCTT
TACTCTAGCCAGTTAGCTGTATATAGCCCAAGTCCCATTGTTGGTGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25520g_CDS-001

Protein length: 243 aa.
Product: Conserved hypothetical protein

>YALI0D25520g_CDS-001 MSLSIDKYKRIYRKNPLPEVADYAAELQQSREQFKNVKFAFLEQENKEKFIRSLTTNDRV
LEQADIDAVTAESATGKEQLRVEKRKVEEISKEVEELAQEVVAKDGALEEQKEKKKKLQS
ELADVQKQVSALQDESHNLPPHLAEMMGQSLQELEIQLEQSKAELQTSKEMVTQVEEELV
PQLNQELADKKAETGALQGDLLHATAEADRAVAERERLKGKYNDKERLILWLKSSLEVME
QQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG