YALI0D25212g

Overview

Description similar to uniprot|Q02648 Saccharomyces cerevisiae YPL030W TRM44 tRNA(Ser) Um(44) 2'-O-methyltransferase
Locus type CDS
Locus tag YALI0D25212g

Location

Species Yarrowia lipolytica Positions 3360716..3362371
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1656 (nuc.)
Previous locus YALI0D25190g Next locus YALI0D25234g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25212g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25212gYALI0D25212g_mRNA-001YALI0D25212g_CDS-001

Nucleotide sequence

 

>YALI0D25212g
ATGTTCACACCCACCGATATCAGCGGCGAGCCGTCCGCGGTCGGCACACAATGGACGCCG
TATCTGTCGCACCCGGTCGACTTTGGGGCCCAGCACTTTCTCGAGGCCATGCTCAACGTG
ATCAGCCAGCCCAACATCAACTCGTCGGTGATCATGAGAGCCGATATCATTTCTGACTCG
CTCAACATGATGCCGAACATCATGGGCACGGACAAGGCCAATGAAGGGTTCATTTTCGAT
ACCCATGAAGGACCTGTCGACGACGACAAGAAGGATACAGACAAGGACAAGAACACTCCA
GTTCCTCCGAATCTGCAGGATTACGAGCCCCGACAAGTCGAGGTGACTCCCTGTCCAGTC
AAACGAGTCATTGTTCGTCGAATCATCCCCCGAAACCCCCAGAACGACTTTTCCGTCAAC
CAAACATGCATCGTCCACTCGGACAAGCCGTTGTGGGACTCTGACGGCAAAGAAACGTCC
GAGGGCGCCAAAATCGCCATTTCCTACATTTCGCACCACGACCATCCCAAGTCGTGTCCC
TACTACCTGCCCTGTGTCAAGGCCGTATTGCTGTACTTTGACGGAAGTGCCATCTCCGTC
TACTACGAAAAGTATACCGACTACGAGCTCTCGGCCGAGCAGGAGGAACGATGCGGTCGA
ATTGCCCTGCATCTTCTCCACACTGTGTTCCGCCACTCGTCGGGTCAAAAGGCAGGCTAC
AAGAAACGGGTGCATCACGACATGATCATCGACCGAATCAAGTTCCAGGACAGATACATC
TACCTGAAGCAAAAGTACGCACATTCGCTGGTGTCCTCATGGGTCGAGTCCACAGACCCT
CGCAAACACGTGTTTGAAGATCTTGCCATCGCCGCCTTTCTCATCGAGCTGTGGGGCCAG
ATGTACAAGAACAAGGACGATATTTATTTCTATGATCTGGGCTGCGGCAACGGCCTGCTG
GTCAACATTCTAATCAAGGAAGGCTACGTGGGCGAGGGAGTCGACGCGCGCGCACGCAAA
TCCTGGCAGACCTACGAGCCCGAGGTGACCCAGAAGCTGCTGGAGAAAATCGTGGTCCCC
ACGGTTCTTCTGGACCAAATGGTGGGCCAGGCCCAATACCTGCCCCCTCACGCTGCTGAG
AAGCGACTCGCAGAAGCCAACGGTCTGGCCACGGATCCCAGAGTGTTCCAGACTGCTGGG
CTGCCCGAAAACGCATTTCTCATCGGAAACCACTCAGACGAACTCACCTGCTGGATTCCG
CTCATGGACCGTCCCTTCATGGTCATTCCCTGCTGCTCCCACGCGTTGTCGGGCGAGAAA
AAACGGTTCCCGCCCACCTCGTCGGATCCCGAGGAGAAGTCAACGTACCGGTCGCTCGTG
GGTCACGTGGAACAGCTGTCGTCGAAAATCGGCTGGCAGGTAGAGAAGGAGTATCTGCGA
ATCCCGTCCACTCGAAACGCCGCAGTCATTGGCCGAACCCGCGTCGAGCCCCAGATGAAC
ATCTTTGAGATTCTGTACTCGGAGGGAGGAGGAGAGGGCTGGGTCGAGAGAGCACGAGAT
CTCTGTGCAAAATCCCCGAGGAACCACTAGAGTATTTACTGCAAGTTAACCTGTGGAATA
GGTAGACTAGATAGGTAAGAATGTACATAGCTGTTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25212g_CDS-001

Protein length: 530 aa.
Product: tRNA(Ser) Um(44) 2'-O-methyltransferase, putative

>YALI0D25212g_CDS-001 MFTPTDISGEPSAVGTQWTPYLSHPVDFGAQHFLEAMLNVISQPNINSSVIMRADIISDS
LNMMPNIMGTDKANEGFIFDTHEGPVDDDKKDTDKDKNTPVPPNLQDYEPRQVEVTPCPV
KRVIVRRIIPRNPQNDFSVNQTCIVHSDKPLWDSDGKETSEGAKIAISYISHHDHPKSCP
YYLPCVKAVLLYFDGSAISVYYEKYTDYELSAEQEERCGRIALHLLHTVFRHSSGQKAGY
KKRVHHDMIIDRIKFQDRYIYLKQKYAHSLVSSWVESTDPRKHVFEDLAIAAFLIELWGQ
MYKNKDDIYFYDLGCGNGLLVNILIKEGYVGEGVDARARKSWQTYEPEVTQKLLEKIVVP
TVLLDQMVGQAQYLPPHAAEKRLAEANGLATDPRVFQTAGLPENAFLIGNHSDELTCWIP
LMDRPFMVIPCCSHALSGEKKRFPPTSSDPEEKSTYRSLVGHVEQLSSKIGWQVEKEYLR
IPSTRNAAVIGRTRVEPQMNIFEILYSEGGGEGWVERARDLCAKSPRNH*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG