YALI0D24497g

Overview

Description similar to uniprot|Q12389 Saccharomyces cerevisiae YDL031W DBP10 Putative ATP-dependent RNA helicase of the DEAD-box protein family, constituent of 66S pre-ribosomal particles
Locus type CDS
Locus tag YALI0D24497g

Location

Species Yarrowia lipolytica Positions 3255418..3258610
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3193 (nuc.)
Previous locus YALI0D24475g Next locus YALI0D24519g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D24497g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D24497gYALI0D24497g_mRNA-001YALI0D24497g_CDS-001

Nucleotide sequence

 

>YALI0D24497g
ATGTCCGACAGTGAGGTTGAATACGACATTGCGGGGTCTTTGAATCCGGGGGTGGATTCG
GAAGACGACTATTCGTCCGGATCAGAGTCCGACAGCGAGATTCCCGACATTATTGAGGAC
AGTGAAGATGAGACCGGGCCCCAGCAGGGCGAACCGGGCACCATGACTTTCCCCAATCTG
GAACTGTCCGATGACGATGACGACGACGACGATGACGACGAGGGCAGAAAGAAGAAGAAG
AAAAAGACGGACGACTCGGTGGAAAGCTACTTTGGAGCACCGCAAACGGGCAAAAAAAGC
TCGGGCAGTTTTGCTGGTCTGGGTTTGTCGCAGTTGGTGCTTAAAAATATTGCACGAAAG
GGGTTCAAGCAGCCGACGCCGATCCAGCGAAAGACGATTCCGCTGGTTCTGGAGGGCAAA
GACGTGGTGGGAATGGCCCGAACCGGAAGTGGCAAGACAGCGGCGTTTGTGCTGCCCATG
TTGGAGAAGCTCAAGGTCCACAGCGCCAAGGTGGGCGCGCGGGCGGTGATTCTGTCGCCG
TCACGTGAGCTAGCGCTGCAGACGCTCAAGGTGGTCAAGGACTTTTCTGCCGGCACCGAT
CTGCGTCTGGCCATGTTGGTTGGAGGCGATTCGCTGGAGGAGCAGTTCAAAATGATGATG
TCCAATCCAGACATTATTATCGCCACCCCAGGCCGGTTTCTGCATCTCAAGGTGGAGATG
GAGCTGTCGTTGGCGTCGGTGGAGTACATTTGTTTCGACGAGGCCGACCGGCTGTTCGAG
CTGGGTTTTGGTGAGCAGATGAACGAGCTGTTAGCGTCGTTGCCCAGCAACAGACAGACT
CTGCTGTTTTCCGCCACGCTTCCCAAGACGCTGGTGGAGTTTGCCAAGGCTGGTCTTCAC
GACCCGATTCTGGTTCGTCTGGATGCCGAGACCAAGTTGCCAGAGCATTTGGAAATGACG
TTTTTTGCCGTCAAGGAGAACCAGCGAGACGCCTGCTTGGCCTTCATTCTCAAGGAGGTG
ATCCAGATGCCGTTTGCAACGCCGGAGCAGCTCAAAGAGCTCGAGCGACTGGATGAACGG
GCCATTGACGACGGAGAACGGGATGAGGACCGGAAACAAAAACGGCCCAAGTTCAAGAAA
GAACGGCTGCCCCCTGCGCACCAATTGCCCTCGGAAAAGTCGACCATCGTCTTCTGTCCC
ACCAAGCATCATGTGGAGTATGTCATTGTCTTGCTTCAAACTCTGGGGTACGCGGTTTCG
TACATTTACGGCACGTTGGACCAGCATGCTCGTAAGAACCAGCTGTATCGGTTCCGCACG
GGCAAAACGTCTATCTTGGTGGTCACTGATGTGGCTGCGCGAGGTATTGATGTGCCTGTT
CTGGCCAATGTTATCAATTATTCGCTTCCTCCGTCCCCCAAGGTGTTTATCCATCGTGTG
GGTCGAACAGCTCGAGCCGGCAACCGCGGATGGGCTTATTCCATCATCAAGGACAACGAC
ATTCCGTATCTGTTGGATCTGGAGGTGTTTTTGGGCCGCAAGCTACTGACTCCTCGGTTG
TTCAAGCAACAGAATCCCGACCCTTCGGCCGAGCCCGATTACGTCAACACTCTGACAATT
GGAGCTCCTCCGCGCCAGGCGCTCGAAATCCACGGCGAGGAGCTCGCCCAGATGGTCAAG
GACTCGTACGAGCTGCAGCAGCTGTCGGAGGTTGCGGTCAAGGGCGAGCGAATGTACAAC
AAGACCAAGGGAAGTGCTTCTCAGGAGTCGGCCAAGCGGTCAAAGCAGATTATGGCACTG
GGATGGGACGACCATCATCTCATGTTTGGCGAGGATGGCGAGTCTGCCAAGGACGCGTTG
TTGGCACGATTGGGCCAGAAGCGCATTCGAGAAACGGTGTTTGAGTTCCGCAAGAGCAAA
ACCACCTCTGGCGCCGAGATGATGGCCACTCGTCGGGCCCAGCTGGCTCCGATCCAGCGC
CGGGCCGCGGAAAAGCGTGCCATTCAGGAAAAGGAGCGGCTGGCGGGTCTGGTTCATTCG
CAGGATGCGGAGATTGCCCGGTCTACCGAGGAAGATATGGCTACCGAGGCGGATCTCACC
GGGTTCACTACGGAGGAGGATCTTCGGGCGGCCAAGAAGGCGCAAAAGTCCAAGAAGCGC
TCCTTCAGAGACTCGGAGAACTTCATGTCCCACTACGCACCCACCAACGACGATAAGGGC
TATGCTGTGGGCAACTTTGCCGGGGCTGCGTCCAATGCCACGTTTGATCTCATCAACGAC
GGCTCGGAAATGCAGCAGAAACAGGGCATGAAGTGGGACAAGAAGAAGGGTAAGTTCATC
AACGCGGGCTCGGAGGGTGGCAAGAAGTTCATTCGAGGTGAGGGAGGCCAGCGAATCGCC
GCGTCGTTCCGGTCGGGCCGATTCGATAAGTGGAAGGCCGCCCACAAGGTCGGCAATCTC
AAGGTTGGCGCTCTGGAGGAGTCTGGGCCTGCCACTAAGCGGGTTTTGTCTGCGCGAGAG
TTCAAACACAACAAAAACGAAGCCCCCAAACGAGCCGACAAGTACCGAGACGATTTCCAC
AAGCAAAAGACCAAGGTCGCCGCTGCCAAGGAAGACGGACGAATCCAGAAACCCCAGCCC
AAGAGCGAGCTCAAGTCCACCGCCGATGTTCGAAAGAGCCGAATCCTGGCCGAGAAGCGC
AAGCAGAAGAATGCCCGGCCGAGTCGGGGTGGCAGGGGTGGAGGTCGTGGAGGTCGTGGA
GGAGGTCGTGGAGGGCGTTAAGAGGAGTCTTCGGAGGATTGGGGTTGATCGAGGAGGTCG
CTGGTTAGGTGGTTTTTTGTTTGGTCACGTGAAAAGTCACGTGGGTCTTCTGGAGGGCGT
CGTTTAGTGACTCTTTTGGGGACTTCTATGATGAGTGTTTGACCTCACATGTCCTCATGC
TCGCAGTTGATCTCACATGTACATCTGACACCACCACCACCACCAACCACCAATCTCGAC
TCGCCGAAGTTTCTACACACTCTTGAAGAACAAACCCACCCATCTACTACCATGTCACGA
GAACATTTTGTTTCGTCTCCGTTCCATCTCCTCATCACGAGACTGGAATATTTCCGAGCC
ACGGCCCATTGCACTATAGAAAATAAAACTAGAATATCACGTTTATAAAAAAAACCCAGA
ATTGTTCTCAAGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D24497g_CDS-001

Protein length: 927 aa.
Product: ATP-dependent RNA helicase of the DEAD-box protein family, putative

>YALI0D24497g_CDS-001 MSDSEVEYDIAGSLNPGVDSEDDYSSGSESDSEIPDIIEDSEDETGPQQGEPGTMTFPNL
ELSDDDDDDDDDDEGRKKKKKKTDDSVESYFGAPQTGKKSSGSFAGLGLSQLVLKNIARK
GFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSP
SRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPGRFLHLKVEM
ELSLASVEYICFDEADRLFELGFGEQMNELLASLPSNRQTLLFSATLPKTLVEFAKAGLH
DPILVRLDAETKLPEHLEMTFFAVKENQRDACLAFILKEVIQMPFATPEQLKELERLDER
AIDDGERDEDRKQKRPKFKKERLPPAHQLPSEKSTIVFCPTKHHVEYVIVLLQTLGYAVS
YIYGTLDQHARKNQLYRFRTGKTSILVVTDVAARGIDVPVLANVINYSLPPSPKVFIHRV
GRTARAGNRGWAYSIIKDNDIPYLLDLEVFLGRKLLTPRLFKQQNPDPSAEPDYVNTLTI
GAPPRQALEIHGEELAQMVKDSYELQQLSEVAVKGERMYNKTKGSASQESAKRSKQIMAL
GWDDHHLMFGEDGESAKDALLARLGQKRIRETVFEFRKSKTTSGAEMMATRRAQLAPIQR
RAAEKRAIQEKERLAGLVHSQDAEIARSTEEDMATEADLTGFTTEEDLRAAKKAQKSKKR
SFRDSENFMSHYAPTNDDKGYAVGNFAGAASNATFDLINDGSEMQQKQGMKWDKKKGKFI
NAGSEGGKKFIRGEGGQRIAASFRSGRFDKWKAAHKVGNLKVGALEESGPATKRVLSARE
FKHNKNEAPKRADKYRDDFHKQKTKVAAAKEDGRIQKPQPKSELKSTADVRKSRILAEKR
KQKNARPSRGGRGGGRGGRGGGRGGR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG