YALI0D23639g

Overview

Description similar to uniprot|O74858 Schizosaccharomyces pombe Lysyl-tRNA synthetase
Locus type CDS
Locus tag YALI0D23639g

Location

Species Yarrowia lipolytica Positions 3073174..3075119
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1946 (nuc.)
Previous locus YALI0D23617g Next locus YALI0D23661g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D23639g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D23639gYALI0D23639g_mRNA-001YALI0D23639g_CDS-001

Nucleotide sequence

 

>YALI0D23639g
ATGGTAAGTACAACAGCTCCTGCGGGCTTTCCAAGGATGAACAATGACCGCGTGACTGAG
CTTTTTTGCTCCGAAAGACGAAAATCTTCTAATCTTCTCTCTGACGGTTCCACAGCAAGT
ACCACCCTTCTGGTCCTCGACTAACCCAGCTACGACTCCCCAAACGAGTGGCACGGGTCC
AATTGAGACCCCAGAGCCTTCGGTACTATTCCAACGAGGCGGCCGACTTTGCCAACCGAA
AACAACGCATTGCCGACGACATTAACGAGCACAAAAAGACATGGTATCCGCTACTGCAAC
AGGTGCAGGAGGAGAAGGACCATGTGGTGAGATTGAAGGACTTCAAAGAGAAATTCCATC
ACGTGACGCTTGAAAACCCCCATCCGTCTCACGTGACTGTCAGAGGCCGCGTTACCAAGC
TGCGTCGGGCCTCCAAGGGTCTGGTGTTTATGGATCTGGTGCAGGACGGAATCAAGGTCC
AAACGGTCGTTAAGATGCACGCCATGGACCCCGAGCTAAGTAAACAGGAGTTTCAGGAGA
AAATTGAGACTTTTCGGCCCGGCGACGTGGTTTCTGTGACTGGAAAGCCCGGTAGAACTC
CTGCTGGTGAGCTTAGTTTGATTGCTGTGCGTCCTGCGGAGCTTCTCACTCCGTGTCTTC
ATCCATTGCCCAGCAACCAGTCGGGGGATGTGCACAAGCGCCTTGCTAATCGTGTTGTTG
ACTTTTCAACTTCTCCCGAGTCTCGAGAAATGATTTATGCCAGAGCTACCGTGATTGCCT
ATGTCAGAAGATTCTTTTCCGATAGAGGGTTTCTCGAGGTTGAAACGCCCATCCTGAGTG
ATGTAGCTGGAGGTGCTTCTGCCAGACCGTTCACCACGGAATCCAATCACTTGACGAGGA
CAAAGAAGAAGTCAAAGTCCGATTGCAAAGAAATAACAACTCAGATCGCTCTGAGAGTGG
CTCCGGAGCTGTGGCTCAAACGTCTGGTCATTTCTGGGTTTGATAAAGTGTTTGAGGTGG
GTCCGTCATTCCGAAACGAGTCCATTGACTCCACGCACAACCCTGAATTCACTACCTGTG
AGTTCTACTGGGGCTATGCAGAGTTGAAAGATCTGACAGACACATTGGAGGAATTCTTTA
TTGGTCTTCTAACAACCGTTATTACTAAACATCCCAGTTATTCTGAAAGACTAACTCCCT
GGTTGGAAGAGTTTAAGAAGGGTATCAAGCATGTGGACTTTCTGAAAACTATTGCGGACA
AATCTGGTCACGAGCTGCCACGTGATCTCACAGACGTTGATGGTTTGGTCAGCATGTATA
AATCACTGGGTCTCAAGTTACCGTCTGTGTTGTCCCCCGCCAAACTGTGGGACGAGCTGG
CAGCTGAGTATGTTGAAAAGTCCGGCCGGGTGCTTTTGATTACGAACCAGCCCGAGCTCA
TGTCTCCGCTGGCCAAGTCATGGACACGTGATGGATACGCTCTGTCCAAGCGGTTCGAGT
TGTTTATTGGCGGCATGGAGTATGCCAATGGCTACGAGGAGGAGAACTCGCCGTTTGCGC
AGATGGATAAGTTTGTGAGCCAGCAACAGTCACGTGACGAACATGCTGACGACGAGGCGC
ATGTTCAAGATTCTGGATACGTGACTGATATGGAGTGGGGTCTTCCTCCGACTGCTGGGT
GTGGAATTGGTATTGACCGACTGGTCATGTTTATCACTGGTGCTAAGAGTATTCAACAGG
TGATTCCGTTTGCGGGGTTGAAGATGGCAAGGTAGGAGCACTTTGAAAAGTCGTCGATCA
GGAGTTGTTACGTAAGTAACTCCTGTTGACATCCAGGAGGAATCTTTTCTCTTCGCTGTG
GGTTGCTGTCCCCTCTAGAAGACTGGGATACAGCGGTCTAGGTGTATATGTACATAGATA
TGGTATTGTTAACTTTTGATAGTCGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D23639g_CDS-001

Protein length: 543 aa.
Product: Lysyl-tRNA synthetase, putative

>YALI0D23639g_CDS-001 MLRLPKRVARVQLRPQSLRYYSNEAADFANRKQRIADDINEHKKTWYPLLQQVQEEKDHV
VRLKDFKEKFHHVTLENPHPSHVTVRGRVTKLRRASKGLVFMDLVQDGIKVQTVVKMHAM
DPELSKQEFQEKIETFRPGDVVSVTGKPGRTPAGELSLIAVRPAELLTPCLHPLPSNQSG
DVHKRLANRVVDFSTSPESREMIYARATVIAYVRRFFSDRGFLEVETPILSDVAGGASAR
PFTTESNHLTRTKKKSKSDCKEITTQIALRVAPELWLKRLVISGFDKVFEVGPSFRNESI
DSTHNPEFTTCEFYWGYAELKDLTDTLEEFFIGLLTTVITKHPSYSERLTPWLEEFKKGI
KHVDFLKTIADKSGHELPRDLTDVDGLVSMYKSLGLKLPSVLSPAKLWDELAAEYVEKSG
RVLLITNQPELMSPLAKSWTRDGYALSKRFELFIGGMEYANGYEEENSPFAQMDKFVSQQ
QSRDEHADDEAHVQDSGYVTDMEWGLPPTAGCGIGIDRLVMFITGAKSIQQVIPFAGLKM
AR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG