YALI0D23133g

Overview

Description weakly similar to uniprot|P36120 Saccharomyces cerevisiae YKR024c DBP7 RNA helicase required for 60S ribosomal subunit assembly
Locus type CDS
Locus tag YALI0D23133g

Location

Species Yarrowia lipolytica Positions 2996840..2999356
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2517 (nuc.)
Previous locus YALI0D23089r Next locus YALI0D23155g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D23133g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D23133gYALI0D23133g_mRNA-001YALI0D23133g_CDS-001

Nucleotide sequence

 

>YALI0D23133g
ATGATGCTGAATCTGGTGGTGGCGGACGGCCCTCGACAGCTGTCTGCGCGCGAGAAGGCC
GCCAAGCTGAAGAAGTCTGGCCTCTCGTTTGCCCAGCGAAAGGCTCTGCGAGAAGAGGAG
AAAAAAAACGCCTGGAAGAAGGAACAAGGAGGAATTACGACGACAATCGAGGATCGAATG
AAGCGACGGGAGCAGGATAACCCTCCAGTGAGACCGAAACCCTACGATAAGCCTTATGAG
AAGAAGCCTTATGAGAAGAAACCCTTTGAGAAGAAGCCTTATGAAAAGAAGTCCTACGAC
AAACCTGTTGCGTCTAAACCTGTTGAGGAGACCGACGAAGAGAAATACCAGCGACTCATG
GAGGGAGGTAAGCGGCCCGAGAAGGAAAGATGGGTGCCTCAGCGAAACTTCCGGAACAGA
AGAGATATGGAGAAGGCTGGAAAGGACCAGTCGCAAGATGCGACTCCTAAACACCATGAT
CGAGACGTGATCGGTACCCGTGAAGACGGCTCGCTGATTAGACGAATTCGAGAAAAGACT
GGAGCCAAGGGAGGTATCAAGGGCACTTATGTGTCTTCTATTTTCTCTGAGAAGAAGGAA
GATCGAATTGCCGGAGAAGATGTTCAGATGGAGGATGAGGAGGAAGAAGAAGCAGAGAAC
AACGCAGAGTCGTCAAACGCCGCTTTAAAGGATTCCACTACTTTCTCTGGTCTTGGATGC
AGCCAGCGACTCGTGGATGCCTTAGTCGGCATGCAACTGGCTAAGCCTACCAAGATCCAG
CGTGCAACAATCCCCCGGCTTATTCAACGAGAGCGAGATTTGTTTGTCCAGGCGCAGACC
GGTTCCGGAAAGACGCTCGCTTTTGTTCTGCCTGTTTTGGAGCGAATCATGTCATGTGAT
GATGTGTCACGTGAGACTGGCTTGTTTGCCGTGATTCTGACTCCTACACGTGAGCTGACT
ACGCAGATCTACTCTGTTTTGGAGACTCTATGTCGAAAGGCTTGCCCCTGGATTGTTCCT
GGTATTGTGATTGGAGGAGAGAAGAAGAAGAGCGAAAAGGCCCGAATTCGAAAGGGTGTC
AACATCCTGGTAGCCACTCCTGGACGACTGGCTGATCATTTTGACAACACAGAAGCTCTG
GATCTGAGTCAGGTGCGATGGGTGGTTCTGGACGAAGGCGATCGACTTATGGAGCTTGGT
TTCGAGGAGACTATCACCAAAATTCTGCGAACCATCGAGTGGAAGTCTGTTCTACGGGGC
GAAAACTATCTCAAGGATATCCCCAAGAACCTCAAACCCTTGCCTTCCAGAAGAGTCACT
GTTCTCTGTTCCGCTACGATGAAGGGAGGAGTCACTGAGCTTGGAAAGAGCACTTTGAAG
GACGCCGATTGGGTGTCTAACGATTCTGTTGAGGATGCTCTTGCTGAGACTTCTGTGGAA
ACGTTCTCTGCTCCTTCTCAGCTTGTTCAGGAATGGGTTGTCGTTCCTGCTAAGCTCAGG
CTAGTGACTCTTCTTGGAGCCCTCCGAGGAGATATTCTGCAGAGCTCCGAAAAGACTAAC
ACCAAGGTGATTGTCTTCTTGTCTTGTTCGGACTCTGTGGACTTCCATTTCGATGTTCTT
TCACGTGACGGCTCTCAGATTAACAAGATGGATACTGCCAAGACTGCCCCTCTCTTGTTG
GACGATGTTTCCACTTCTGTTTACAAACTGCACGGTTCTCTGTCTCAGCAGGCCCGAACA
GCGACTCTGGCGTCATTCGCCAAGAACTCCACTCCCTCTATTCTTCTTTGTACTGATGTT
GCTTCTCGAGGTCTGGATCTGCCCAAGATCACTCATGTTATCGAGTACGATCCTCCATTC
TCCATCGAGGACCATTTGCATCGAGTTGGTCGAACTGCGCGAGCAGGTCAGGACGGTCGA
GCTCTGCTTTTCTTACTGCCCGGTGCCGAGGAGGGATACGTTGAGAAGCTCAAGCAGAGT
CAGCAGATGAAGAAAACCACGTACGAGAACATTCTGGCTGCCGGATTTGGAGGAAAGGGA
TGGGACTTTGCTGCTACCAACTACCATCTGGATGTTGAGAGATGGGTGCTGGGAGATGAA
ACTGCTCTGGACAGAGCTCGACGGGGATTCACATCGCATATTCGAGCCTACGCGACTCAT
ATTGCAGCTGAAAAGGACATGTTTAACGTCAGAATGCTGCATCTGGGACACTTGGCCAAG
TCTTTCGCACTGCGAGAAGCTCCAGGAAAGTTGGGCAAGAAGAAGGACCCTGAAAAGATC
AAGGTCAATAAGGATGGAAGTCTGGACGAGACCCAGGCCAGAAAGAAGATGCTGGACCGG
TCCAGAAAGCATGTTTACAACTCCGGAGAGAGTGCCATGGGTGGCTATGTGCTTGAATAA
CGAGCCCACGTCTGAGCGAGAGTCAAGGCTTGTTTCTCCAGAGCTATTTTCAGTCTCTGT
GAAAGCTTGTGCTCAAAAATAACTAAAGGATAGCATAGTAATGAAATGATTGATAGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D23133g_CDS-001

Protein length: 800 aa.
Product: Conserved hypothetical protein

>YALI0D23133g_CDS-001 MMLNLVVADGPRQLSAREKAAKLKKSGLSFAQRKALREEEKKNAWKKEQGGITTTIEDRM
KRREQDNPPVRPKPYDKPYEKKPYEKKPFEKKPYEKKSYDKPVASKPVEETDEEKYQRLM
EGGKRPEKERWVPQRNFRNRRDMEKAGKDQSQDATPKHHDRDVIGTREDGSLIRRIREKT
GAKGGIKGTYVSSIFSEKKEDRIAGEDVQMEDEEEEEAENNAESSNAALKDSTTFSGLGC
SQRLVDALVGMQLAKPTKIQRATIPRLIQRERDLFVQAQTGSGKTLAFVLPVLERIMSCD
DVSRETGLFAVILTPTRELTTQIYSVLETLCRKACPWIVPGIVIGGEKKKSEKARIRKGV
NILVATPGRLADHFDNTEALDLSQVRWVVLDEGDRLMELGFEETITKILRTIEWKSVLRG
ENYLKDIPKNLKPLPSRRVTVLCSATMKGGVTELGKSTLKDADWVSNDSVEDALAETSVE
TFSAPSQLVQEWVVVPAKLRLVTLLGALRGDILQSSEKTNTKVIVFLSCSDSVDFHFDVL
SRDGSQINKMDTAKTAPLLLDDVSTSVYKLHGSLSQQARTATLASFAKNSTPSILLCTDV
ASRGLDLPKITHVIEYDPPFSIEDHLHRVGRTARAGQDGRALLFLLPGAEEGYVEKLKQS
QQMKKTTYENILAAGFGGKGWDFAATNYHLDVERWVLGDETALDRARRGFTSHIRAYATH
IAAEKDMFNVRMLHLGHLAKSFALREAPGKLGKKKDPEKIKVNKDGSLDETQARKKMLDR
SRKHVYNSGESAMGGYVLE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG