YALI0D23045g

Overview

Description weakly similar to uniprot|Q9HFN0 Emericella nidulans ARCA protein
Locus type CDS
Locus tag YALI0D23045g

Location

Species Yarrowia lipolytica Positions 2989070..2990966
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1897 (nuc.)
Previous locus YALI0D23001g Next locus YALI0D23067g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D23045g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D23045gYALI0D23045g_mRNA-001YALI0D23045g_CDS-001

Nucleotide sequence

 

>YALI0D23045g
ATGGACAAACCAAAACGCCGGCGAGTGCGCACGGGCTGTCTGACGTGTCGCGAGCGGCAT
CTCAAGTGCGACGAGGGAGTGCCGGACTGTGTCAACTGCATCAAGTCTCGCAAGGTGTGT
CGACGAGGCATACGACTCAACTTCATTGATTGCAAGGTGGGAGACGCCTCTCACTATGAA
GTTAGTGACAGCTGGCGGCCAAGGATCTTTGACGAGTCACGAGATATAGCGGCGGGCTAC
GACGGAGGCCTCGGGCTCTATGCCAGATACCCTACTCCTGTCAATGATGTTGACATGGAT
GATGTGGGAGGTTCTCAAGCTACACAAACGGGTGTGGCAACGACAAATCGACATGCGGGC
GGACAGATTACACACACACTAGGCGCATCCATGCCCAACCCGCTACAGGCGTTTCGACCG
CCCCAAATACACAAATATGCATATTCGTCCGCCAAAGGAATGACTCTCAACGACCCCACG
ACGCCGTCACGTGATCCAGACATGAGCGAACTGCTGCCCGTGTTTGTGGAGTATATTGCG
CCAATGTTGGATTTGTTTTGTGGCTCGGAAATGTTTTCCAAGGTCGTTCCTGTGATTGCC
TTGACTCAGCCGACCTTGCAGTACTCGGTCTTGTGTTGTGGAGCGGTCATTTTGGCGCAC
AAAAGCAAGACAGTTGAGGCTGAAAGACGAGCTGAGAAATACTTTCTACAGGCCACAAAG
TCATTGTTAGGCGATATGACCTCTTCTCCCAAAGACCTGGAGTTGTGTGTCTTGTCCACA
ATTTGTCTATCGGTCTATGAACTGATTCAGGAGGTGTCTGAGGCCCGAGGAAGGCGTATT
TCGGGCGTTAATCAAATGATTGAAGAGTTCCATTGGGTTGTTATGCCCACTGGACGGCCT
GAAATGAACTCTCTGGTGGAAAAATGCTGTTTTTGGGCCAACATGATGATCGATTTCATC
TTCTCGCGCCGAGTCGATTCAGGCCCGTTTCTGAACCCCCACAATTGGGGGTCAGTACAC
GATGTACATACCTTGCCCTCAAACACGCCCCCTGACGCTTGGTGGATGCATTCCATATTG
CATCTATCTGCCTGTGCTAACTACTTTAGCCAGCAGTGCCACGTGCCTACTTATGACGAG
TTTGTGCACAACCAGCGGTGGATCGAGTGGAAGAAGATTGTTTTGGATATCAAGAGATGG
AAAGACAGACTGCCTAGTCGACTAGGAGCGATTGTGGATCTGAAACTGCCTTCCAATCAG
TCACATTTTGACACAATTCTGTTTGCGTCTTCGTCAGCCATGTACGCAAACATTTGCTAC
CATGGAGCCTTGTTGCTCATGAACAAATGCAAGCCATACACTGCCTACCCCATCCACGAT
CCAGAAGTGGCTATAGATGTGACGTATCACTCTCGACGGATCCTGGGAATTAATAGACAA
ACCAAGAACGTGATTCACGCCATCATGAGCCTGTGGACAGTGCGACTGGCGTGCTTTCAT
GTGACGAATTATGTGGAGCAGGTGGAGATTGTCAGACATTTGGACTACTTGCAGGAGGCG
GGAGCATGGAAGACGAGCGACACAAGGGAGTTCTTTCAGAGTTATTGGGGATGGCAAACA
TCATAACGTCACAGCGCGTTGCATAACTGTGGGCCATGTGGGAGCACTGGATGATATTAG
TGAGGAAAGACGAGCCGTGTGACGAGCCGTGATGATGGAGAATTTGGACTGTTGGTGTAT
AACACTCTGTAATTCTGTCACTTCTCTCCAGCCATGATGTTCATTGTTGGAGCTACCGGT
TCCCCTCCCTGGATCCGACTGTACATTGGGCCCGCTCCTGTATAACCTAGACTGGCTAGC
TAGGCTATTATTTATTAATTGTATATTAGTTGCATGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D23045g_CDS-001

Protein length: 542 aa.
Product: Conserved hypothetical protein

>YALI0D23045g_CDS-001 MDKPKRRRVRTGCLTCRERHLKCDEGVPDCVNCIKSRKVCRRGIRLNFIDCKVGDASHYE
VSDSWRPRIFDESRDIAAGYDGGLGLYARYPTPVNDVDMDDVGGSQATQTGVATTNRHAG
GQITHTLGASMPNPLQAFRPPQIHKYAYSSAKGMTLNDPTTPSRDPDMSELLPVFVEYIA
PMLDLFCGSEMFSKVVPVIALTQPTLQYSVLCCGAVILAHKSKTVEAERRAEKYFLQATK
SLLGDMTSSPKDLELCVLSTICLSVYELIQEVSEARGRRISGVNQMIEEFHWVVMPTGRP
EMNSLVEKCCFWANMMIDFIFSRRVDSGPFLNPHNWGSVHDVHTLPSNTPPDAWWMHSIL
HLSACANYFSQQCHVPTYDEFVHNQRWIEWKKIVLDIKRWKDRLPSRLGAIVDLKLPSNQ
SHFDTILFASSSAMYANICYHGALLLMNKCKPYTAYPIHDPEVAIDVTYHSRRILGINRQ
TKNVIHAIMSLWTVRLACFHVTNYVEQVEIVRHLDYLQEAGAWKTSDTREFFQSYWGWQT
S*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG