YALI0D23001g

Overview

Description similar to uniprot|Q08924 Saccharomyces cerevisiae YPL183C
Locus type CDS
Locus tag YALI0D23001g

Location

Species Yarrowia lipolytica Positions 2983236..2986131
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2896 (nuc.)
Previous locus YALI0D22979g Next locus YALI0D23045g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D23001g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D23001gYALI0D23001g_mRNA-001YALI0D23001g_CDS-001

Nucleotide sequence

 

>YALI0D23001g
ATGACTAAAACGAACTACGGAGCAATCACTGCGGTGAAAGCTGTATCACGTGACTGCCTT
TACACCGGACAGGGCCGGTCCATCACGAAATATTCTCTTTCTGGGGACAAATGGTGGAGC
CAACGGCTTTTTGGACGCAACAAGATCCATGGCATTGATATTGACCAGAAGAAGGGCAAA
ATGCTGGTTTTTGGAGGAGACTCGATTCTGGTGACCGATCTGGAGTGCTCATCACGTGAT
GAGCGGTCTGTGGGCGACTGGATTTGTGATGCCAAGTTTGGATCTGACAATGACACTATC
TACGTTCTGACTGCTCACAATAGGGTGTTGATTTTGGACAGCGATCTCAAGATCAAGGAG
ATTGTCACGTGCTCGGAAAACTCTCTGCTGTATTCCGGTTCACTTCACGTGACAGAGGAC
TCTGAATCTGTGCTAGTTGCCTCGGGAACTGTGCTACATGGAATCTATATTTGGAAGCTG
GCTAATGGAAAGATTATGCACAACTTCACGGACCATGAGGGCTCCATTTTCGACGTTAAG
ATCTCCCCAGACTTTGCTTACGTCATCTCGTGTTCCGACGACCGGTTCGTCAAGCTGTTT
GACTTGAAAGCCGGAAAATTGGTCGGCTCAGGCTTCGGACATGGGGCTCGAATCTGGCAG
GTTGGGTTTTACGGAGATAACAATTACGTCAGCAGCAGCGAGGATTCGACTGCGATTTTG
TGGTCTCATAACGAGTCACGTGGTCTGCTGGAGCCCGCCAAGCAGTTTCCCGGTCACGTG
GGCAAGAACATGTGGTGTTTTGACATTCTAGACAAGAGCCTTATCACCGGAGGGGGGGAC
GGACGATGGCGGGAATTCGACTTGGAGATCGATCACTTGACCGAATATGACTACGATCAC
GTGATTGGAAACTCTGGTGCTTTCAAGAACTTCATCAACCTGTCCTTTACCAAAACTGCC
GTTGGAACTGCCAATGGAGAAGTCTATCTAGTCGACAGAAGCAGCGATGACGTGACCTGG
AGCCTGATTTACCAGAACGACGCTTTGAGGTCTCTCAATCTAATGGCTGGATGGCCTGGG
TCTCCTTTCGTGGCTGTAGGAAGTCGGTTTGGACAGGTGTTTGTCATCAACACGGAAACA
AAGCAGGTTTCGGAAACCAAGGTGTTTGAAGGAAAGGTGTCTGGTATGCTGACACGTGAT
CTTAGCGGTGCAAAGTACCTAATTGCTACTTCTCAAAACGATAAAGATGATAATGTTCTA
CTCGAGGTGGGTACGGACACCCAGAAACGGTACAAAGCTATGGACACCTTCCCAGTCACG
TGTTTTGACGTAAACGAGAAGGGTAATGTGGTTATGGGATCCAGATTCGGAGCTCTTGCT
TACTTTGACACCGTGGATGCAACTCCTGTGATTTTCAGAAAGGCCATCAACGCAGAGACC
GTCACTGACGTGCTCTTTACAGACGAGATCCGCGTGACTCTCACCACTAAGAATGGCTTC
TATGGTAATCTGGATATTCGCACTAAACAGTTTTCACTGCTCAACAAATCGAGCCAGAAC
AGCATCTTCAAGATTCTGTGTCTGTCTCCTCTCATCACGTGTGGTTTCAAAACCAACTCG
TTCGTCATATCAGACGAGTCTGCCAACGCCCAGTTGTTTGCTGCCGACTGTGGAGGAGCT
CATCGAAGCTGGGACGTGCTTTTTGGTGACAACAAAGTGCTGTTCAACTTTGTGCGAAAG
TCAATCATGTGCGAAATCGCCAGTAACGTCATCCCTGTCTCGTCATATTACTCCCACGGT
CGAGAGGTGCGAGCCATTGACGTCAACGGCTCCGTAGTTGCCTCAGGAGCTGAAGACACC
AATGTTATTCTGTCCGAAGTGCGGGACGGCCAGTTGCACAACCTCCTCACATACAGAAAA
CACACGTCCGGTATCCAGACCCTGAAGTGGGTGAGTCCGGAGTTGCTCATCTCGTCGTCT
GCACGAGAAGAACTCTTCATCTGGAAGTTTAATGCCTCCGAAAAGACTCTCACTCCCTGG
CTGTCTCTTCCTCGAGGTGATAATCCCGACCTGCGAATCATGGACTTTGTTTACAAAGCC
TGCGACGGGGGATTTGAGCTCCTTTGCGTCTACTCGGACTCTTCCCTCCGACTGTGGAAG
TACGACAACTCCTCCTTTACTCTCGTGTCAGACCTCAAGTACACTCAGCATTGCCTGCTG
AACGTGGATCTTGTCGAAGATGACAAGTCGGCGCTTATCAGTGCCACCGACGGGTCTCTT
TCGGTCTATGAGCTGCCTTCTCTGCGACCCAAGAGCCACATTTATGCCCATCAAAGCTCT
GTGAGGTTCTGCAGAAAGGGCGAACTAATCTTCTCTGGAGGAGACGATAACAAGCTTGTG
GTGACCGAGCTGAAGAACGGTGAGCTGAGAGAGATAGCATCCATCGCTTCTGCTCACTCT
AGTACCATCACGGAGGTGGCTCCGTTGGACGGATCAGAAGCTGACATTGTTTCTGTCTCT
GTTGATCAGAATGTCCGAAAGTGGAAGTTTTCTGACGGAGAGCTCAAGCTAATGTCGGAT
GAGTTTACCACTGTGGCTGATACTGGATGTGTGTGTCCTTACGAGGGTGGTTTGTTGATT
GGAGGAGCCGGTTTAGATTACTGGACCGAGTGAACTTGTGCCAAGGGAAGATGACCGGCC
TTCAAACCTGTGAAGAACAGGGGCGCCTGACTGGGAATTGTTAGTGTGAATGGTATAATA
ATTGAGAATGCATGGGATAGGACTCCCTGTAGGGTTGATGACATCGGATGTGGTTATCTA
TGAGAGAATTGTCAAGTAACCTAAACAATAATACTTAAGTTCATCCAAGTATGTTCAAAA
CAGCCAATATTCTATC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D23001g_CDS-001

Protein length: 891 aa.
Product: WD40 domain-containing protein involved in endosomal recycling, putative

>YALI0D23001g_CDS-001 MTKTNYGAITAVKAVSRDCLYTGQGRSITKYSLSGDKWWSQRLFGRNKIHGIDIDQKKGK
MLVFGGDSILVTDLECSSRDERSVGDWICDAKFGSDNDTIYVLTAHNRVLILDSDLKIKE
IVTCSENSLLYSGSLHVTEDSESVLVASGTVLHGIYIWKLANGKIMHNFTDHEGSIFDVK
ISPDFAYVISCSDDRFVKLFDLKAGKLVGSGFGHGARIWQVGFYGDNNYVSSSEDSTAIL
WSHNESRGLLEPAKQFPGHVGKNMWCFDILDKSLITGGGDGRWREFDLEIDHLTEYDYDH
VIGNSGAFKNFINLSFTKTAVGTANGEVYLVDRSSDDVTWSLIYQNDALRSLNLMAGWPG
SPFVAVGSRFGQVFVINTETKQVSETKVFEGKVSGMLTRDLSGAKYLIATSQNDKDDNVL
LEVGTDTQKRYKAMDTFPVTCFDVNEKGNVVMGSRFGALAYFDTVDATPVIFRKAINAET
VTDVLFTDEIRVTLTTKNGFYGNLDIRTKQFSLLNKSSQNSIFKILCLSPLITCGFKTNS
FVISDESANAQLFAADCGGAHRSWDVLFGDNKVLFNFVRKSIMCEIASNVIPVSSYYSHG
REVRAIDVNGSVVASGAEDTNVILSEVRDGQLHNLLTYRKHTSGIQTLKWVSPELLISSS
AREELFIWKFNASEKTLTPWLSLPRGDNPDLRIMDFVYKACDGGFELLCVYSDSSLRLWK
YDNSSFTLVSDLKYTQHCLLNVDLVEDDKSALISATDGSLSVYELPSLRPKSHIYAHQSS
VRFCRKGELIFSGGDDNKLVVTELKNGELREIASIASAHSSTITEVAPLDGSEADIVSVS
VDQNVRKWKFSDGELKLMSDEFTTVADTGCVCPYEGGLLIGGAGLDYWTE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG