YALI0D06039g - PHR1

Overview

Description uniprot|Q6CA43 Yarrowia lipolytica YALI0D06039g PHR1 Cell surface glycosidase expressed at alkaline pH
Locus type CDS
Gene name PHR1
Locus tag YALI0D06039g

Location

Species Yarrowia lipolytica Positions 770804..772712
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1909 (nuc.)
Previous locus YALI0D06017g Next locus YALI0D06061g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D06039g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D06039gYALI0D06039g_mRNA-001YALI0D06039g_CDS-001

Nucleotide sequence

 

>YALI0D06039g
ATGAAGTTCTCAGCGGTCTCAATCGCTGCTGCCCTGGCCTCGCTGGTGGCAGCAGCAGAC
GTGCCCTCTATTGACATTGTGGGCAACAAGTTCTTCTACTCCAACAACGGCTCTCAATTC
TACATCCGAGGAGTGGCCTACCAGCAGGACTCGGCCAACGAGACAGCCAAGGAGACCTTT
TCGGACCCTCTGTCGGACGGCGACGCCTGTAAGCGAGACCTGCCCTACCTGGTGCAGCTC
AAGACCAACGTGCTTCGAGTGTACGCCATCGACACCACCAAGGACCACGACACATGCATG
CAGCTCTTCAACGACGCCGGCATCTACGTCATTTCCGATCTCTCACAGCCCGGCGAGTCC
ATCAACCGAAACTCGCCCTCGTGGGACGTGGATCTGTACCAGCGATACACCAGCGTAGTG
GACACCATGCAAAAGTACCCCAACATGCTGGGTTTCTTTGCCGGAAACGAGGTCACTAAC
AACAACACCAACACCGATGCGTCTCCCTACGTCAAGGCTGCCATCCGAGACATGAAGTCG
TACATGAAGGAGAAGTCGTACCGATCCATTCCCGTCGGATACGCCACCAACGATGACGAG
AAGACCCGAGACGACCTGGCCACCTATTTCCAGTGCGGCAACGCCTCCGAGGCAGCCGAT
TTCTACGGAATCAACATCTACGAGTGGTGTGGAGACGCCACCTTTGAGTCCTCCGGTTAC
CAGCAGCGAACCGAGGAGTACAAGAACTTCACCATCCCCATCTTCTTCTCCGAGTACGGC
TGCAACCGAGTCAAGCCGCGACAGTTCTCCGACGTGCCCGTTCTGTTTGGCCCCAACATG
ACCGACGTCTGGTCCGGAGGAATCGTCTACATGTACTTTGAGGAGCAGAACCAGTACGGT
CTGGTGTCTGTTTCCGGAAGCTCCGTCTCCACTCTCGACGACTTCAACAACCTGTCTTCG
CAGATGGCTAAGATTTCTCCTTCCTCCGCCAACACCAACGACTACAAGCCCTCTCAGACC
GCTGGTGGCGTCTCGTGCCCCGACTTCAACGCCAACTGGAAAGGCTCTCCCACCCTGCCT
CCCACCCCCAAGGTCGGAACCTGTCAGTGCATCAACGATGGCTCTTCTTGTGTCGTCAAC
TCGGACACTAACGCCAAGAACTACGGCGATCTCTTTGGAGAGCTGTGCGGTAACCTCGAT
GTGGACTGCTCCGAGATCCAGTCCAACGGAACCTCCGGCAAGTACGGAGACCTGTCCTTC
TGTGACGCCAAGCAGAAGCTCAACTTCCTCATGGGCAAGTACTACGACTCCCAGAACGGC
AACTCTCAGGCCTGCGACTTTTCTTCCCAGGCCTCCATTGTCCAGAGCCCCAAGACCGGA
TCCAACTGCCAGAACGCCCAGGCCACTGCTGTCTCTTCCGGCTCGTCCGGCTCTTCCGGC
TCGTCCGGCTCTGGATCTTCGGGCTCTGGATCGTCCGGATCCTCGGGCTCTGGCTCGGGC
TCTGCTAAGGGCTCTGCTGCTGCCGCTGCCTCTGGCTCGGCCGCCGCCTCGTCCTCCAAG
GGCGGAAACAAGAAGAGCGCCGGCGCCTCGCTGGCTGCCGAGAAGGTGGTTGCCTCCGTC
GTGTTTGGCGCCATCGCCATCATGGCCGTTATTGTTTAACATTCTAAAAAGTTCATAGAT
AATCATAATGCAAGTATTCATTTGTAGGTAGTACAAGATGGGGGGGGGGGGGGGGGGGCA
GATTGTGGTGTCAATTGTGGTGTCAAAATGAAGCTGAGCAAGCGACCTTTTCAAATGTCT
CAAAAAAGCGTCATCGGCCAATCACAAGTGCCGAGAAATGGTCAGATCACAAATTTTTCA
AGATAGTTTTTCACATTATAGAGTAACCTCGAGTAATTTTTAACTTAAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D06039g_CDS-001

Protein length: 553 aa.
Product: Cell surface glycosidase expressed at alkaline pH
Gene: PHR1

>YALI0D06039g_CDS-001 MKFSAVSIAAALASLVAAADVPSIDIVGNKFFYSNNGSQFYIRGVAYQQDSANETAKETF
SDPLSDGDACKRDLPYLVQLKTNVLRVYAIDTTKDHDTCMQLFNDAGIYVISDLSQPGES
INRNSPSWDVDLYQRYTSVVDTMQKYPNMLGFFAGNEVTNNNTNTDASPYVKAAIRDMKS
YMKEKSYRSIPVGYATNDDEKTRDDLATYFQCGNASEAADFYGINIYEWCGDATFESSGY
QQRTEEYKNFTIPIFFSEYGCNRVKPRQFSDVPVLFGPNMTDVWSGGIVYMYFEEQNQYG
LVSVSGSSVSTLDDFNNLSSQMAKISPSSANTNDYKPSQTAGGVSCPDFNANWKGSPTLP
PTPKVGTCQCINDGSSCVVNSDTNAKNYGDLFGELCGNLDVDCSEIQSNGTSGKYGDLSF
CDAKQKLNFLMGKYYDSQNGNSQACDFSSQASIVQSPKTGSNCQNAQATAVSSGSSGSSG
SSGSGSSGSGSSGSSGSGSGSAKGSAAAAASGSAAASSSKGGNKKSAGASLAAEKVVASV
VFGAIAIMAVIV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG