YALI0D04873g

Overview

Description similar to uniprot|P38929 Saccharomyces cerevisiae YGL006w PMC1 Ca2+-transporting P-type ATPase
Locus type CDS
Locus tag YALI0D04873g

Location

Species Yarrowia lipolytica Positions 615599..619565
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3967 (nuc.)
Previous locus YALI0D04851g Next locus YALI0D04884g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D04873g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D04873gYALI0D04873g_mRNA-001YALI0D04873g_CDS-001

Nucleotide sequence

 

>YALI0D04873g
ATGCCAGACACGACCCAAGACCCCCCGACACATACAGATAGTACGCCACAAGGTACTCCA
GGTGCAATAATGAACCCCCAGGCGCCCCCCGTGATATCCATCGACACCAGTGTGAGTGAG
AGGCAGTGAAGGAATCACAGTGAATGGAGCGTGCACAGTGACGGTGTGGTGTCGTCTTGT
GTTGTCAAGGCAGTGATATCACATCTTGTTATGATGATGATGTGGGGTGTGAAGACCCGC
AGTTTCAAACTAACCCAGATTGTCGATGCAGACGAAAAACACCCCCCGGTTCTGATCGAA
CCAACCAATTCATACTCCCCCACGATCAAGGAGGAAACAGCCACACCCTCGACATGTAAC
GACTCGGATTTTTCGACACACGCAGAAGAAGCACAACAGCACCTCAATGAAGACGCAGAC
GGCACACTGGCCGGAGGATACAAATGGGCCCCCAAGCAGCTCAGCCACCTGATCGACCCC
AAGTCGGTGTTTGTGCTGGCAGAGATGGGTGGTCTGGAGGGACTCGCCACTGATCTCAAC
ACTAATCTTCAGTCGGGTCTGTCCGAGGAGGACGCTGGTGCCCGAGACGCACGAATCGAA
GCATACGACCGCAACATTCTTCCCGAAAAGAAGGCAAAGTCGCTCTTCTACCTCATGTGG
ATGGCGCTCCAAGATAAGGTGCTTATTCTGTTGACAGTTGCTGCCATCATCTCGCTGGCT
CTGGGTCTGTATGAGACCTTTGGCCAGCCCGCCGAGCACGACGCCCAGGGTCGAAAGCTG
CCCAAGGTCGACTGGGTCGAGGGAGTTGCAATCATGGTCGCCATTATCATTGTGGTTGTG
GTTGGAGCAGGTAACGATTGGCAGAAGGAATTGCGGTTCGTCAAACTCAACAAAAAAAAG
GAAGATCGAATGATTCGTGTAATTAGAAGTGGAAAGACCCAGGAAGTGCCCATCGCCGAT
CTTCTGGTAGGTGATCTGGTACTTCTGGAGCCTGGAGATATGATCCCAGCAGACGGTATC
CTTGTTTCGGGCCACAACATCAAGTGCGATGAGTCCTCTGCTACCGGTGAGACCGACACC
ATGAAGAAAATGTCTGGTTTCGACGCCATGACTGCTTACGAGAGCCGGGTCGACGGACTT
ACTCGAGGCAAGGTTGATCCCTTCATTCTGTCTGGTTCTAAGGTGCTTGAGGGTATTGGT
ACCTATGTTGTTACTGCAGTTGGACCCAACTCTTTGTTTGGAAAGACCCTGCTCTCTCTC
AACATTGAGGACGAGGCCACTCCTCTGCAGGCAAAGCTCAACGACATTGCCGAGGGCATC
GCCAAGGCCGGTGGTCTTGCTGCTCTGATTCTGTTCATTGTTCTTTTCATCCGATTCTGC
GCCCGTCTCCCCGGCAACAAGGACACCCCTGCCGAAAAGGGTAACGAGTTTATGGACATT
TTGATTACCGCTATCACCATTATTGTCGTGGCTGTTCCTGAGGGTCTGCCCCTGGCTGTG
ACTCTCGCCCTGGCCTTTGCTACCACTCGAATGCTCAAGGACAATAACCTTGTGCGAGAG
CTGCGAGCATGTGAGACTATGGGTAATGCCACCACAGTGTGTTCTGACAAGACCGGAACT
CTGACTGAGAACCGAATGACTGTCACCCGAGGAACTATTGGAGTCGAGGAGTTTGCGGTA
GAGGAAATCACCCAGTTCTTCGAGACTCTTCCTGCCGAGGCCCGAGAGATTCTCTTTGAG
TCCATCGTGTTTAACACCACCGCGTTTGAGACCGACCAGATTGCCGACACTGACGCCGAA
CGGTTTGTGGGATCCAAGACCGAGACCGCTCTCCTCAACTTCGCTCACCTCTACATGGGT
CTTCAAAACCTTGCCAACCAGCGAGACGCTCGTGAGATTGTACAGATTGTGCCCTTTGAC
TCGTCTCGAAAGTGCATGGCTGTGATTCTCAAGATGAAGGGCTTTTACCGAATGTATATC
AAGGGAGCCTCCGAGGTTCTGTCTGCCCAGTCTTCAATGATCTACAACAACAATGTCGTT
TCTCCCATCACTAAAGAACAGCGACAGGACATTGACCAGAAGATTCTCCACTATGGCGAG
CAGTCTCTTCGTGGCATTGCTCTTGCCTACCGAGACTTTGAGTGTTCTTCCTGGCCCCCT
AAGGGCATGGCCTCTTCTGACGACTCTTCACAGGCCGAATTTGAACCTATGTTCTCCGAC
CTGACTCTCTTTGGTCTCATTGGTATCATGGATCCTCTTCGAGAGGGTGTCACCAAGGCT
GTTGCCGACTGTCAGTCGGCCGGTGTCATTGTCCGAATGGTTACTGGAGATAACGTCAAC
ACTGCCAAGGCCATTGCTCGAGAGTGTGGCATCTACTCTGAGGGCGGCCTGGTGATGGAA
GGACCTGTCTTCCGACGACTTGCCGACCACGAGATGAAAGAGATGCTTCCCCAACTCCAG
GTTCTTGCCCGATCTTCCCCTGAAGACAAGCGAATTCTCGTCAAAGCTCTCAAGGAGATG
GGCGAGACCGTTGCTGTCACTGGTGATGGTACCAACGATGGTCCTGCCTTGAAGCTGGCC
GACGTGGGTTTCTCCATGGGTATTGCAGGTACTGAGGTTGCCAAGGAGGCTTCGTCCATT
ATTCTGATGGACGACAACTTCTCCTCCATTGTCAAGGCTATCATGTGGGGCCGAACCGTC
AACGACGCTGTGAAGAAGTTCCTGCAGTTCCAGTTGACCGTCAACGTTACTGCTGTCGTT
CTGACCTTTGTTTCTGCCGTCGTCAACAAGCACGGAAAGTCTGTGCTGACAGCCGTTCAG
CTTCTGTGGGTCAATCTGATTATGGACACTCTTGCCGCTCTTGCTTTGGCCACCGACCCT
CCTTCTCCTGACGTGCTGGAGCGAAAGCCCGACCGAAAGTCACAGAACCTCATCACCGTG
ACCATGTGGAAGATGATTTTCGGCCAGGCCATTTTCCAGCTGGGCGTTACCTTTGTGCTA
TTCTTCGCCGGCAAGTACTTCTGGACCGTGGATACTCCCAGACAGCAAGACGAGCTGGAC
GCCACCGTGTTCAACACCTTCGTGTGGATGCAGTTTTTTAACCTCTTTGTCAACCGACGA
CTCGATAACAAGATGAACATGTTCTCAGGTATTCACCGAAACATCTTCTTCATTCTCATT
GTGGTCATCATTGGCGGTTTCCAGGTCCTCATCATGTTTGTCGGAGGTGCTGCCTTTTCC
ATTGTGCACCTCAACGGCGGCCAGTGGGCCACTTCCCTCATTTGTGGTGTTATTTCTCTC
CCCGCCGGTATGCTTCTACGTCTAATTCCGGACGCCTGGATCTCCGCCATGTACCCCCAG
TTCCTGCACAACTGGATCTCCAAGTTGTGGCGAATCATGCGACCCAAGAACAAGGAGATT
GTCGAGATTCACGTTCCCCGGGACGATGGCTTCCAGGGATCCGACTACAAGTGGCACTCC
GGTATTGAGGAGGCCCGTGTGCAGCTCGAGTTCATGCGAGCTCTGCGAGGAGGCCGAATG
TACCAAGTACCCAACCTGGTGCCTGTCAAGATCCGACAAATGTTCCAGCGATCTAGAGCC
AACTCAGTGGCTTCCCTGTCCAAGAAGGAGCCCTCAGTCAGTACGACCACCGCTAGCCCT
ACCCAGACCGTCTTTGATGAGTCTGGACGAGACCGATGGACCGAAAACGACGGTCACCTG
GCAGTTCCCGGAGCCCACTACGGTGGATCTGGTAACGGCAACAATGGTAACACTTCCCCC
ACCTCTCCCGGAGGTTCTTCTTCTCGGTCTTCATCTCGGGGCTCTTCCATTGGAGCCTTG
GTCATGGTTCCCGCCATTGTGGGCGGAGCGGTTGCCGGATGGAACCCAGAGCTCAAGCCT
CCCTCCAACTAATGTATTTATTGACTTATTGTATAGCATGCTAATGAATTATCTATTTGA
TTTGATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D04873g_CDS-001

Protein length: 1255 aa.
Product: Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions, putative

>YALI0D04873g_CDS-001 MPDTTQDPPTHTDSTPQGTPGAIMNPQAPPVISIDTSIVDADEKHPPVLIEPTNSYSPTI
KEETATPSTCNDSDFSTHAEEAQQHLNEDADGTLAGGYKWAPKQLSHLIDPKSVFVLAEM
GGLEGLATDLNTNLQSGLSEEDAGARDARIEAYDRNILPEKKAKSLFYLMWMALQDKVLI
LLTVAAIISLALGLYETFGQPAEHDAQGRKLPKVDWVEGVAIMVAIIIVVVVGAGNDWQK
ELRFVKLNKKKEDRMIRVIRSGKTQEVPIADLLVGDLVLLEPGDMIPADGILVSGHNIKC
DESSATGETDTMKKMSGFDAMTAYESRVDGLTRGKVDPFILSGSKVLEGIGTYVVTAVGP
NSLFGKTLLSLNIEDEATPLQAKLNDIAEGIAKAGGLAALILFIVLFIRFCARLPGNKDT
PAEKGNEFMDILITAITIIVVAVPEGLPLAVTLALAFATTRMLKDNNLVRELRACETMGN
ATTVCSDKTGTLTENRMTVTRGTIGVEEFAVEEITQFFETLPAEAREILFESIVFNTTAF
ETDQIADTDAERFVGSKTETALLNFAHLYMGLQNLANQRDAREIVQIVPFDSSRKCMAVI
LKMKGFYRMYIKGASEVLSAQSSMIYNNNVVSPITKEQRQDIDQKILHYGEQSLRGIALA
YRDFECSSWPPKGMASSDDSSQAEFEPMFSDLTLFGLIGIMDPLREGVTKAVADCQSAGV
IVRMVTGDNVNTAKAIARECGIYSEGGLVMEGPVFRRLADHEMKEMLPQLQVLARSSPED
KRILVKALKEMGETVAVTGDGTNDGPALKLADVGFSMGIAGTEVAKEASSIILMDDNFSS
IVKAIMWGRTVNDAVKKFLQFQLTVNVTAVVLTFVSAVVNKHGKSVLTAVQLLWVNLIMD
TLAALALATDPPSPDVLERKPDRKSQNLITVTMWKMIFGQAIFQLGVTFVLFFAGKYFWT
VDTPRQQDELDATVFNTFVWMQFFNLFVNRRLDNKMNMFSGIHRNIFFILIVVIIGGFQV
LIMFVGGAAFSIVHLNGGQWATSLICGVISLPAGMLLRLIPDAWISAMYPQFLHNWISKL
WRIMRPKNKEIVEIHVPRDDGFQGSDYKWHSGIEEARVQLEFMRALRGGRMYQVPNLVPV
KIRQMFQRSRANSVASLSKKEPSVSTTTASPTQTVFDESGRDRWTENDGHLAVPGAHYGG
SGNGNNGNTSPTSPGGSSSRSSSRGSSIGALVMVPAIVGGAVAGWNPELKPPSN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG