YALI0C08250g

Overview

Description similar to uniprot|Q6CD99 Yarrowia lipolytica YALI0C02519g, pseudogene
Locus type CDS
Locus tag YALI0C08250g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 1110182..1111979
Strain CLIB 122 Strand Sense
Chromosome YALI0C Total length 1798 (nuc.)
Previous locus YALI0C08228g Next locus YALI0C08283g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C08250g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C08250gYALI0C08250g_mRNA-001YALI0C08250g_CDS-001

Nucleotide sequence

 

>YALI0C08250g
ATGGAAGCAACCGAAATACGACTGCTGATACTGCAGGAAGAGCCTCTTGATACCCTTGTT
GCATTGAATGAGACTTGTCGTAGCTGGCGGTCGTTCATGTTGGCCCATGACGAGTCTCTG
GTGCGTCCAAAAGTCCTTCAACGTGTTCCCTGGATGGAGCTCGTGCCTGAAGTGGGTATG
GGCTCTTGGATGGACTGTGCACGTTTGATAGTGGCTAGAAGGCGATCTCTAACCAAAGAA
CCTGACAAATGGTGGAGATTCAATGAAAGGCAAGCAACTGAAAACTACTGTCTTCATGAG
CTGATGAGGAACACAGATATTGGTTATTTGCCAGCGGAAAACATTGATGGAGGTACACTA
CCTGACACTTTTGAGCCTCTATTTGAGTCTGAGATGGCCCATGTCCAGGGCAAGTACTTT
CTGAGTCCCAGGGGTAAAGTGCTGGATATGACAACGATAAAACTTGTTGGTGAGCCTATT
GAGAGAAAAAGAGCCACTGTCTACAGTTCTCTTTTTGCAATGGACGCTGCTAAAACAGAC
GGGCTGGCGGACCAAGTGTCCCCGTTCGGGTGTCACTGTGGAGAGCAAGGTCCCTTTCAA
AGTCAGACAACAGAAGGATGACATGTTGGTGATCTCCGATACTGAGAGTGGAAAGACGTA
CATTGTTAAAGATGCGTTTCTGGAGAGTTCCAATTTCGTGTTTGATCCTGAAAGCGCCAA
ATGTGTTCATTTCCCTCAGTATCAACCTACCTACGACCTTGCAATGACCCCAGGCTGGAA
AGGAGTCATCTGTATAGAAGATATATTTTTTGAGAGAGGGCCAGGAGCTCAAGTCAAGTT
GTATTATTGTGATTTGGCTGACAAAGACTCTGACAGGATTCTTCTCTGTAAGTTTCCGAG
ACCTAACAACGAGGATATTTCCACAGTTATCTTCTATGCAGGAATGATGTTTCTGAATGT
CAATATTTCTGCTATGGTTCCGTTATGGATAGACCTAGAGCGGTTTCAGGATACAAGTCA
CGCGTTTCTCGGAAACAAATACTGTTGGAGAACTGTTTTGATGAGAACCGGGTCTCACAT
TCACTACTCATGCATGGACAAATGGTACGACATGATTAGGTCGAGTGACGAAAGATGGGT
GAGCAGCTGGTTCGGCAGACAAGTTGGCGACCTTTGGACGTTTAAAACTTACAGTGTTGG
TGACCCGGGCTTGCACACTTGTGCTCCCTGTCCACATTTCCACCCCTTGGCCTCCACCAT
TTTCGTGGGACGAAGCGCTGCCAACCAACCAATCTTTTACACGGTCACAAAGCCACTGCT
GGAGACTCTCGACTCGTTCTTGTACGGAAAGAGGTTCAACCAAAACGGCTTTCCGGGTGG
ATCTGTTAAAACAGATCCCTCCAAGTTTTGGAAGAAGGTCATCCAAGAGTACGACAAGAA
TCCCTTTTTGGCCTTCACGCAGTTTGGGGATAAACGGAGGCATTTTGTGAGCGACCAGAG
CCTGACCAGCGAACGTTTGGAGGATCCTATTGGTCTTTCGTGGTTGGAGGAATGGGGTTG
TCAGTGAGAGACTACATTTGGCTGTTGAGCAAGTACATACCTTACTGTACTGAGCTTGAA
AGCGGGGTGTATTTTTGTCTTTATCTTTGCTTCTGATTGTTTCCTTCTTATTAACAAATT
CAGAAAGAGAGGACAATATAGAGGGGGAGGTGTAGAATGTACTGGTTAAGCCGATCAGAC
ATCTAGTGACTCTTTGGCAACCAAACATGTATTTATAAGGACCTTGATCTCTTGATGG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C08250g_CDS-001

Protein length: 522 aa.
Product: Pseudogene, conserved in the Yarrowia clade

>YALI0C08250g_CDS-001 MEATEIRLLILQEEPLDTLVALNETCRSWRSFMLAHDESLVRPKVLQRVPWMELVPEVGM
GSWMDCARLIVARRRSLTKEPDKWWRFNERQATENYCLHELMRNTDIGYLPAENIDGGTL
PDTFEPLFESEMAHVQGKYFLSPRGKVLDMTTIKLVGEPIERKRATVYSLFLQWTLLKQT
GWRTKCPRSGVTVESKVPFKVRQQKDDMLVISDTESGKTYIVKDAFLESSNFVFDPESAK
CVHFPQYQPTYDLAMTPGWKGVICIEDIFFERGPGAQVKLYYCDLADKDSDRILLCKFPR
PNNEDISTVIFYAGMMFLNVNISAMVPLWIDLERFQDTSHAFLGNKYCWRTVLMRTGSHI
HYSCMDKWYDMIRSSDERWVSSWFGRQVGDLWTFKTYSVGDPGLHTCAPCPHFHPLASTI
FVGRSAANQPIFYTVTKPLLETLDSFLYGKRFNQNGFPGGSVKTDPSKFWKKVIQEYDKN
PFLAFTQFGDKRRHFVSDQSLTSERLEDPIGLSWLEEWGCQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG