YALI0C01287g

Overview

Description similar to uniprot|Q86TN4 Homo sapiens tRNA splicing 2 phosphotransferase 1
Locus type CDS
Locus tag YALI0C01287g

Location

Species Yarrowia lipolytica Positions 179210..179953
Strain CLIB 122 Strand Sense
Chromosome YALI0C Total length 744 (nuc.)
Previous locus YALI0C01243g Next locus YALI0C01309g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C01287g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C01287gYALI0C01287g_mRNA-001YALI0C01287g_CDS-001

Nucleotide sequence

 

>YALI0C01287g
ATGCCTCGACCCCGACGAGAAATGACGCCTGACGAGGAGTACTCTCGCAAACTGTCGTAC
ATCTTGCGACACGGCGCCACCAAGGAAAAGCTGCCCATTCGAGAAGACGGATACTTGTCT
GTAGGTGTGCTGCTCAATAGAGCTGGAATCAAGGGGAAATGGAACCTGGAAGACACCAAG
CGGGTTGTGCGAGATAACGACAAACAGAGATACAAGCTCATCTTTGAGCCCACAGAAAAA
CAGCCCAAAGAACCCACAGACCCCAACGATTGCACGGGATACTGGATCAGAGCTAACCAG
GGACACACTATCAACACCAAGGTCGAGATGAAGGCTCTCAAGACCCCCGAGGACTTCCCC
ACTCTTGAGATCTTCCACGCCACCTCGAAACAGGTGCTTCCCATTGTACTTAAGGAAGGA
TTGTCCAAGATGAAACGTCAACATATCCATTTGGCTACCGATCTAGTCACCGAAGGAGGC
TCTGTGGCTGGAAAGCGACTTAACAGAGAGGTGTTCATTTACATCAATGTTCCCAAGGCT
CTGGAGGCCGGAATCGAATTCTTCCTGTCTGAAAATGGTGTTGTCTTGACTGAGGGTAAG
GATGGAAAGATCTCTCGAGAGTTCTTCAGTAAGATTCTGGACAAGAATAACCAGCCGGTT
GACTTGGAGGCGTTGGCATAGGTGCATATAGCAGCATTAAAAACATACTGTATTCGATAA
TATACGTTACAGTCCATGCTTGTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C01287g_CDS-001

Protein length: 227 aa.
Product: tRNA splicing 2 phosphotransferase 1, putative

>YALI0C01287g_CDS-001 MPRPRREMTPDEEYSRKLSYILRHGATKEKLPIREDGYLSVGVLLNRAGIKGKWNLEDTK
RVVRDNDKQRYKLIFEPTEKQPKEPTDPNDCTGYWIRANQGHTINTKVEMKALKTPEDFP
TLEIFHATSKQVLPIVLKEGLSKMKRQHIHLATDLVTEGGSVAGKRLNREVFIYINVPKA
LEAGIEFFLSENGVVLTEGKDGKISREFFSKILDKNNQPVDLEALA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG