YALI0C01243g

Overview

Description similar to uniprot|P32597 Saccharomyces cerevisiae YIL126W STH1 ATPase component of the RSC chromatin remodeling complex
Locus type CDS
Locus tag YALI0C01243g

Location

Species Yarrowia lipolytica Positions 174458..178523
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 4066 (nuc.)
Previous locus YALI0C01238t Next locus YALI0C01287g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C01243g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C01243gYALI0C01243g_mRNA-001YALI0C01243g_CDS-001

Nucleotide sequence

 

>YALI0C01243g
ATGGATCTCGAAAACGGGCATTCGCCAGCACCCAATGGCGGTGCTCTCAACGGCTCCGCC
AAACAGCCCCACTATTATTCCATCCCCACCCCCGAGAGCGTGGAGCAGGCCCAGTTGTTG
TTTTTGGTGAGTATCAGAGGAAGAGGAAGACAAGAGGAGGGGAGACAGACCCAACACGAC
GGACGGAACACCATCACGTGACACCGAGGACGTGACGACACCACGTGACATTGTCAGAGT
GTGATTGTGTTATGGACACGACAGCCGACGTTGGACGGGTCGACACGACATTATCGATGT
CATGGGTCATGGGTCATTGGTATCGTATCGTATCGTTGCACATAACGTGACGACACACGT
GTCTCAACACAGCACAGTGTGCAAGTCTATTGCTTGACCGCCATCTATTCTCATTCTAAC
ACAGCGATTCAATGCTCTTAATCAATCCGACCACCCGGTGACACCCGAACTCGAGGGCAT
CGTCACCCGGCTGCACACCATGGGCCAGGAGCAGCAGCTGTACAACAAGCGTCTGGCAGA
GGTCAACAGCGCCCGAAAAGCCGCCCACAACAAGATCGACCTCGACCTGCTCCGAACCCA
GGTCAACGCGTTCAGATACCTGAGCCGAGGTCTCGACATGCCCACCGACGTGCAGGAGCG
CCTAATGGAGACGGTAGGCATCGAAAGTGACATCACCGAAGAGGAGGCTGACGCAGCACT
TGAAAAGTCACTCACCCCTTACCAGCGACGTCTCAAGGACAGCGGAGTGCCCCCCCGAGG
CGGGTTTGTGGACAACGGGCGGGGAGTCGGTGGACGACACGAGTTCATCATCACGAACCG
AATCTCGCAGCGGATTCTGGAGCTCGAGTCTCTGCCATCAAACCTCGGAGTGTTGGATGC
TTCCCGGGATGATCTCGGCAAAGCCGAAGGCACTGATGCGCTCAAAGTACGAGCTGTGGC
CGAGCTCAAGGCCCTGCGGCTGCTAACCAAGCAAAAAAGTCTGCGGCAACATCTAGTCTT
CTGCAAGGCCCAGACGTCCCAGGTGACCGACTCGGTCATCAACCGGGCTCTCAACCGACG
AGCCAAGGTGCAGACCGCGCACGAGATGCGACTGACGGAGCAGCTAGAGCGACAGCAGCG
CATGGAGCGTGAACGCAAGCAGCGGGAGGAAATCATGGCGTACGTCAACTCGGTGTGCCA
CCAGTCGGACCGAATCAGAGAAGAGGCCCATCGTCGACGAACCAAGCAGTACGCCGTGGC
CAAGGGCATCCAGCAGTTCCACTCGTACGTTGAGCGAGAAGAGAGTCGACGAGTCGAGCG
AACTGCCAAGCAGCGTCTGCAAGCTCTCAAGTCCAACGACGAGGAGGCCTACCTCAAGCT
CCTGGACCAGACCAAGGATACACGTATCACCCACTTGCTGCGACAGACCAATTCGTTCTT
GGACTCTCTGTCATCTGCCGTTCGTGCTCAGCAAGGAGAAGCCGGAACTCAAATGCCCAT
TCCTGCTGCGGAGGAAGAAGGAGGAGAGGGAGAAGAGGACCGCGAGAAGATCGACTACTA
CCATATTGCTCATCGAGTCAAGGAGACAGTCTCCAAGCAGCCTTCTATCTTGGTTGGGGG
TCAGCTCAAGGAGTACCAGCTCAAGGGTCTGCAGTGGATGGTGTCTCTGTATAACAACTC
TCTGAATGGTATCTTGGCCGACGAAATGGGCCTTGGAAAAACTATCCAGTCCATTTCCCT
CATTACCTACCTTATTGAAGTCAAGAGACAGACCCGGCCTTACCTGGTCATTGTCCCTCT
CTCGACACTCACTAACTGGACCAATGAGTTTGAAAAGTGGGCTCCCAGCGTTAAGAAGAT
TGTGTTCAAGGGTTCGCCCAACCAGCGTAAGGAGTTGTCCAACCAGGTACGAGCAGGAGA
CTTCCAGGTGCTGCTCACCACCTACGAGTACATCATCAAGGACAAGGCGCTTCTGGGCCG
AATCCGGTGGGTGCATATGATCATTGACGAAGGTCATCGAATGAAAAACACCCAATCCAA
GCTTGCCCAGACGCTCACGCAGTTCTACTACTCTCGATACCGACTCATTCTTACAGGTAC
CCCTCTGCAGAACAACCTGCCCGAACTGTGGGCGCTGCTCAACTTTGTGCTACCCAAGAT
TTTCAACTCGGTTAAGACGTTCGACGAGTGGTTCAACACGCCGTTTGCTAACAGCGGATC
ACAGGACAAGATGGAGCTCACGGAAGAAGAGACGCTGCTGGTCATCCGACGTCTTCATAA
GGTGCTGCGTCCCTTCCTGCTGCGACGTCTTAAGAAGGACGTTGAGAAGGATCTCCCCGA
CAAGGTGGAGACCGTCATCAAGTGCAAGATGAGCGCTCTTCAGCTCAAAATGTACCAGCA
GATGCTCAAGTACAACGCTTTGTACGTTGGTGACGATTCTGGCGCGGCTGGTGTCAACAA
GAGCGGAGTCAAGGGTCTCAACAACAAGATTATGCAACTGCGTAAGATTTGTAACCATCC
TTATGTATACGAGGAAGTCGAGACTCTTCTGAACCCATCACATGGCAACAACGACCTACT
GTGGCGTTCTGCAGGTAAGTTTGAGCTTTTGGACCGAATTCTGCCCAAGTTCAAGGCTAG
GGACCATAGGGTGCTCATGTTCTTCCAAATGACCCAGATTATGGACATTATGGAGGACTA
TTTGCGGCTCCGTGGCTTGCAGTACCTGCGACTAGATGGTAACACCAAGGCCGACGATCG
ATCCGAGATGCTGAAGCTCTTCAACGCTCCCGATTCGCCCTATTTCTGTTTTCTGCTGTC
CACTCGAGCTGGTGGTCTAGGTCTGAACCTGCAGACAGCCGACACAGTTATCATCTACGA
CACTGATTGGAACCCTCATCAGGATCTGCAGGCACAGGATCGAGCACATCGAATTGGTCA
AACCAAGGAGGTGCGAATTCTGCGTCTGATCACAGAGGATTCCGTTGAGGAGGTTATTCT
CCAGCGAGCTCACGCAAAGCTTGAAATCGACGGAAAGGTCATTCAGGCCGGAAAGTTCGA
TAACAAGTCGACGGCCGAGGAGCAGGAGGCGTTCCTGCGAGGGCTGCTGGAGCAGGAGGA
GTCTAAGCGTGGCTCTCGAGAGGCAGAGGACGAGGACCTTGACGATGAGGAGCTCAACGA
CCTGCTGGCTCGAAACGAGGAGGAGCGGGCTTTCTACGCCCAGATGGACGCCGAGCGGAA
CGCCACAAGCGATTATGGCAAGGGCGCAGGACGACCCGATCGGCTGCTTTCCGAGTCCGA
GTTGCCGGACCAGTTCACTCAGGATGTGTCTGAGCATTTCCGAGAGGACGACATGGCCGA
CTCGGACAAGTACGGCCGAGGAGCTCGAGAGCGAAAGGAAGTGTACTACGACGACGGCCT
CACAGAGGAGCAGTGGCTCAACATTGTGGACAATGACGAGGATCTGGACGCTGCCATCAA
GAAGCGACGCCGAAGCCGACGGTCCCGAGCCCCCACTGATCTGGATGACGGTCTGGACGC
CGATGATATCATCGTTGACGATGCCGATGGAGACGACCAGTTTGTCGACGAAGAGGCGTC
TCCTCCTCCCAAGAAGAAGAACAAGAACAAGATCCCCAAGGTCCGGGAAACCTTGTCTGT
GGCTGACCGGGAGGAGCTCAACGAGTCATGCCAGCTGGCTCTCAACGAGTGTTTTGCGCT
GACGGAGCCCTGGGATCCTGAAGATGAGTCTGCGGGCCTGCGGCATGTGTGTGACCTGTT
CCGGTCCATTCCCTCCAAAAAGCTGTATCCCGACTACTTCAAGCTCATCAAGAATCCGAT
TGCGCTTGACGTGATCCAGAAGAAGGTGAAGCAGAATGTGTACCAGAACCGGTACGATTT
TGTGGCTGATTTCGAGCTCATGAACCAGAATGCTCGAACCTACAACGAGGAGAACTCTCC
GGTTGTTACGGATGCCGACCGTCTTTTGGACATTGCCCGGGGTTAGAAGATATATAATGG
GCAAAAAGGTCCCACTAAGCTGTATAATATGATGTGTTTGTTTATT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C01243g_CDS-001

Protein length: 1236 aa.
Product: ATPase component of the RSC chromatin remodeling complex, putative

>YALI0C01243g_CDS-001 MDLENGHSPAPNGGALNGSAKQPHYYSIPTPESVEQAQLLFLRFNALNQSDHPVTPELEG
IVTRLHTMGQEQQLYNKRLAEVNSARKAAHNKIDLDLLRTQVNAFRYLSRGLDMPTDVQE
RLMETVGIESDITEEEADAALEKSLTPYQRRLKDSGVPPRGGFVDNGRGVGGRHEFIITN
RISQRILELESLPSNLGVLDASRDDLGKAEGTDALKVRAVAELKALRLLTKQKSLRQHLV
FCKAQTSQVTDSVINRALNRRAKVQTAHEMRLTEQLERQQRMERERKQREEIMAYVNSVC
HQSDRIREEAHRRRTKQYAVAKGIQQFHSYVEREESRRVERTAKQRLQALKSNDEEAYLK
LLDQTKDTRITHLLRQTNSFLDSLSSAVRAQQGEAGTQMPIPAAEEEGGEGEEDREKIDY
YHIAHRVKETVSKQPSILVGGQLKEYQLKGLQWMVSLYNNSLNGILADEMGLGKTIQSIS
LITYLIEVKRQTRPYLVIVPLSTLTNWTNEFEKWAPSVKKIVFKGSPNQRKELSNQVRAG
DFQVLLTTYEYIIKDKALLGRIRWVHMIIDEGHRMKNTQSKLAQTLTQFYYSRYRLILTG
TPLQNNLPELWALLNFVLPKIFNSVKTFDEWFNTPFANSGSQDKMELTEEETLLVIRRLH
KVLRPFLLRRLKKDVEKDLPDKVETVIKCKMSALQLKMYQQMLKYNALYVGDDSGAAGVN
KSGVKGLNNKIMQLRKICNHPYVYEEVETLLNPSHGNNDLLWRSAGKFELLDRILPKFKA
RDHRVLMFFQMTQIMDIMEDYLRLRGLQYLRLDGNTKADDRSEMLKLFNAPDSPYFCFLL
STRAGGLGLNLQTADTVIIYDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEDSVEEVI
LQRAHAKLEIDGKVIQAGKFDNKSTAEEQEAFLRGLLEQEESKRGSREAEDEDLDDEELN
DLLARNEEERAFYAQMDAERNATSDYGKGAGRPDRLLSESELPDQFTQDVSEHFREDDMA
DSDKYGRGARERKEVYYDDGLTEEQWLNIVDNDEDLDAAIKKRRRSRRSRAPTDLDDGLD
ADDIIVDDADGDDQFVDEEASPPPKKKNKNKIPKVRETLSVADREELNESCQLALNECFA
LTEPWDPEDESAGLRHVCDLFRSIPSKKLYPDYFKLIKNPIALDVIQKKVKQNVYQNRYD
FVADFELMNQNARTYNEENSPVVTDADRLLDIARG*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG