YALI0B22572g

Overview

Description similar to uniprot|P53734 Saccharomyces cerevisiae YNR038W DBP6 Essential protein involved in ribosome biogenesis, ATP-dependent RNA helicase
Locus type CDS
Locus tag YALI0B22572g

Location

Species Yarrowia lipolytica Positions 2970109..2971980
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1872 (nuc.)
Previous locus YALI0B22550g Next locus YALI0B22594g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B22572g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B22572gYALI0B22572g_mRNA-001YALI0B22572g_CDS-001

Nucleotide sequence

 

>YALI0B22572g
ATGTTCACTGGAGTTCGTCGATTTGACCCTACCCAGGGCGGACAGGCGTCGCCTGTACCA
TTCAAGAAGGTCAAACACGAGGAGGAGGAAAGCAAGCCTGAAACCAATGCTGACGAGCAC
TCTGAGGTGGAATATGAGGAGGAGTCTGGGGACGACTCCATGGATGAGGCTGAGGAGGCC
AAGAAGCCCGTGGAGGTCAAGGACGAGGAGGAGAGCGAAGATGAGAACCTTACAGCCGAC
CAGAAGCGAAAGAAGAAGCAGGAAGCCGCCAACCTGGCCAAGCGAGCGGAGGAAAAGGCT
CTAGAGCGAAAGCGAAAGCGAGAACAGCATATGGGCGAGGAGGACTCTGATAGTGAAGAT
GATCTGGCGCCTATCAAGATTTCTGGCAACAACAAAATCAAGCTTGCTAAGGGAACCATT
CGAGCTAAGGGCTTCGAGGAGCTTCCCCAGACTGAAATCTATGAGGATAAACCCGATGAG
AGTGCAACCATCTCTCGAAAGACCCAACTTCAGACACAGCCCATTTTGCGAAATGCTACT
TATGTGGAAATTGACGATGTTGGATCATTTGATGAGTTTGATCTGAGCAAAAATATGATG
AAGAACCTGGACACTTTAGGATACACAAAGGCATTTTCTGTGCAGAAGGCAGTCATTCCT
TGGCTTCTGGCCCAGCAAAAGCTCCTTGCCCCCGATCGAAAGCCCGATCTTCTTGTTTCT
GCATCCACCGGTTCCGGTAAGACCGCCACTTACGGAATCCCCATTATCGAGAAGCTCCGA
GACCGTATTGTTCCTCGAATCAGAGCTGTGGTTGTACTCCCTACAAAGCCCCTGGTCATG
CAAGTCCGAGACGTGCTTGAAAACCTATCCAAGGGATCTTCTTTGTCTGTTGTGGCTCTT
CGAAACGACCGAAGCACCAAACGTGAACGGGCTGTTCTGGAGACTGCCGATATCGTTGTG
GCAGCCCCTGGTCGACTTGTGGAGCAAGTGAAGGAGAACCCCGAGCTCTTCTCTTACATC
GAATTTCTGGTGGTTGACGAGGCCGATCGTCTGCTTGGCCAGGACTACTACGACTGGGCC
TCTGTGTTGCAGAACAACCAGCAGCGGGCCCAGGCTGGTAAGACCAACCTCACTGAGCAC
TACGTTCGAAACATGCAAACACTTATTTTCTCAGCCACCCTCACAGCCAACCCCGAACAC
ATTGCATCCATGGACATCCACAATCCTGGCGTTTTTGTCATTGGTAGTTCTGACAGCTAC
TCTATTCCCAAGAGTCTTACAGAGATTGTCACCCACGTGTCTGCTGCCGAGAAGCCTCTT
ATGCTGTGCGAGCTGCTAGTGCAGAGAGATATCAACAGAGGCGTGGTGTTCACTAAGAGT
TCCGAAACTGCTGCTCGTGTGGCTCGCATGATGGAGATTATGGACGCGGACATTTTCCAC
AAGGATTGGAAGATAGCGGCTGTTTCTGCCGAGACTTCTTCTGTGCACCGACGACGGTCC
ATGAAGCAGTTTATTGATGGCAAGATCGACTTTCTGGTCTGTACCGATTTGGTTTCTCGA
GGTATCGATTTCGTGGTGGATAATGTGATCAACTACGATATCCCTAGTGGAAAGCGAGAG
TATGTGCATCGAGTGGGTCGAACTGCCCGAGCAGGCAGAGAAGGTAACGCATACACCTTC
CTCACTGGCTCTGGAGAAGCCAAGTGGTTCCGGGAGATTGGCGAGTTTGTGGGTCGAACC
CAGGAGGTGGATGCCACTCATATCAACAGTTCCCATAACGACGGATACCAGGAGGCTCTT
GCCAAGCTGGAGGAGGAGGTTTAGAAGGTGTTATAAATGCATTGTAAATTATCATTTAAT
AGACGACTGAGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B22572g_CDS-001

Protein length: 608 aa.
Product: Protein involved in ribosome biogenesis, putative

>YALI0B22572g_CDS-001 MFTGVRRFDPTQGGQASPVPFKKVKHEEEESKPETNADEHSEVEYEEESGDDSMDEAEEA
KKPVEVKDEEESEDENLTADQKRKKKQEAANLAKRAEEKALERKRKREQHMGEEDSDSED
DLAPIKISGNNKIKLAKGTIRAKGFEELPQTEIYEDKPDESATISRKTQLQTQPILRNAT
YVEIDDVGSFDEFDLSKNMMKNLDTLGYTKAFSVQKAVIPWLLAQQKLLAPDRKPDLLVS
ASTGSGKTATYGIPIIEKLRDRIVPRIRAVVVLPTKPLVMQVRDVLENLSKGSSLSVVAL
RNDRSTKRERAVLETADIVVAAPGRLVEQVKENPELFSYIEFLVVDEADRLLGQDYYDWA
SVLQNNQQRAQAGKTNLTEHYVRNMQTLIFSATLTANPEHIASMDIHNPGVFVIGSSDSY
SIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVFTKSSETAARVARMMEIMDADIFH
KDWKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDFVVDNVINYDIPSGKRE
YVHRVGRTARAGREGNAYTFLTGSGEAKWFREIGEFVGRTQEVDATHINSSHNDGYQEAL
AKLEEEV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG