YALI0B22418g

Overview

Description weakly similar to uniprot|A1CKD7 Aspergillus clavatus RING finger domain protein
Locus type CDS
Locus tag YALI0B22418g

Location

Species Yarrowia lipolytica Positions 2942390..2944121
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1732 (nuc.)
Previous locus YALI0B22396g Next locus YALI0B22440g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B22418g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B22418gYALI0B22418g_mRNA-001YALI0B22418g_CDS-001

Nucleotide sequence

 

>YALI0B22418g
ATGGGAAACACTCAGAGATGCTGGATCTGTCTGGGCACTGAGGAAGACCCGCCTCCCTCG
GACCAGGGATACAAGTGGAGACACCCCTGCCAATGTTCGCTCACGGCCCACGAGCTGTGC
CTACTGGACTGGGTCCAGGAGGTGGTCCAGAGCCATCCTGAAAAGGTGGCCGAATCGGAC
TCTAGTCGCCACAACCACAGAATCATTGTGCCTTGTCCTCAGTGCAAGGCCGATATTGTC
ATCGAAGACGAAACTCCATGGCTTCTCTATGTGCGACAAAAGGTGGAGCAAGGAATGGGG
CATGCTCTCATGTACACGGTATTTGCCACCACAGGAGCTGCAGCCACCTATTTCGTCCAT
TCCACACTCTATGGACTCGGTGCCCTGGCTATTCGAAGCTTCTGCACGCCAGATATGGCC
ACAGAACTTCTTCGAATCAGAATCACACCCACAGCCATCGAGATTCTCCCTCCCACCCTC
AATCAGACCATGTTGATTCCTCTCATCCCTGTGGTTCTGGTTGGATCTCGGTTTGGAACA
CACATGCTGGGCGGCATTCTACCTCTGGCCCGTCTGGCTTCCGTGCCCCCTCACAGATAC
TTTGATGATTACCACATCTTCACGTGGCTGCCGCTCATGAAGGTCATTTACGACAAGATC
TACAGCGTGACGGTATATCGAGCTCTGCGACACTTTGCAGTCCAGGCTCGCCCTCAGCTG
TTCCAGGAGCACACAAATGGTGTTCCTGTCGAGGGAGAGGACGCCACACTTCTGCTGGAA
GAGGAGGCTGCTGCTCTTCAGGCCCAGGTAGAGCAGAACAATGTGCCTGGGGCCTTCCCT
CGGGGCAACAACGAGGCTCCAGGCCTTGCACCCGGCCTGCAGGACATTGGCCGAGAGCTG
ATGCGTCTGCGAACAAATGGAGACGACGCTGCGTATGATGCTGTGATGCAAACGCTGGTG
AATCGCGCACGTGACGAGCACGGGTTTGTGGACGCAGAGCAGGTCATGGGATTCCTTGAG
GGCTTCTTCGATGAACTGACTCTCGAAAATGACGTCACGATCGACGAGCTAATGCTGCGG
CTGGAGGAGTATCGGGATGAGCGAGAGAACGCAGCCGCTGAAGAAGACAACAACTTTGGA
CAGCTGGGCCTGTTCAACCGAATCCTGGAACAGGCCGTTGGTGCGATTGGTAACAACCAG
CAGCAACAGCAGGCTCCCCAGCCTACAAACAGCTCGGATCCCGATATTTCGTGGATCCTG
GGCCAATACTCCCTCATCACCCGGGTGGGCAACGCGCTGTTGTTCCCTCTGTACTGTGGA
GCCATGGGAGGACTTCTGTCCGGCATTCCTCTGGTACGAAACGTGTTCACAACACGTGTC
CGACGCAACATTCTGGGCGGCGTCCTGCTCATCCTGCTGCGAGACGGATTTAACATTGTG
ACGGCATATCTCCGCGTTCGACAACTCACGTCGAAGCGGGTTCGTAACTTTCGGCCCCAA
CGCCGAGAAGACAATCCCACTACTAATCGCCCTCGTGGCATGTTCCCTCGTGTTCATTTT
ACCATTAGCAATGTCTGATATGTTTGGCGACATCCACAACTGGCTGGCTGCCGGTTTGTT
TATGTGGCGGCTGGATGTGCGTGAACCCAGTCTCGGTGAATACGAGCCGTTCCCTAGGGG
AACAACAAGTTAATATATGAGTGTGAAATGAGTACATTTGAGGCTGTTTATT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B22418g_CDS-001

Protein length: 526 aa.
Product: Conserved hypothetical protein

>YALI0B22418g_CDS-001 MGNTQRCWICLGTEEDPPPSDQGYKWRHPCQCSLTAHELCLLDWVQEVVQSHPEKVAESD
SSRHNHRIIVPCPQCKADIVIEDETPWLLYVRQKVEQGMGHALMYTVFATTGAAATYFVH
STLYGLGALAIRSFCTPDMATELLRIRITPTAIEILPPTLNQTMLIPLIPVVLVGSRFGT
HMLGGILPLARLASVPPHRYFDDYHIFTWLPLMKVIYDKIYSVTVYRALRHFAVQARPQL
FQEHTNGVPVEGEDATLLLEEEAAALQAQVEQNNVPGAFPRGNNEAPGLAPGLQDIGREL
MRLRTNGDDAAYDAVMQTLVNRARDEHGFVDAEQVMGFLEGFFDELTLENDVTIDELMLR
LEEYRDERENAAAEEDNNFGQLGLFNRILEQAVGAIGNNQQQQQAPQPTNSSDPDISWIL
GQYSLITRVGNALLFPLYCGAMGGLLSGIPLVRNVFTTRVRRNILGGVLLILLRDGFNIV
TAYLRVRQLTSKRVRNFRPQRREDNPTTNRPRGMFPRVHFTISNV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG