YALI0B03146g

Overview

Description weakly similar to uniprot|Q07807 Saccharomyces cerevisiae YLL013c transcript-specific regulator of mRNA degradation
Locus type CDS
Locus tag YALI0B03146g

Location

Species Yarrowia lipolytica Positions 459019..460799
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1781 (nuc.)
Previous locus YALI0B03124g Next locus YALI0B03157r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B03146g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B03146gYALI0B03146g_mRNA-001YALI0B03146g_CDS-001

Nucleotide sequence

 

>YALI0B03146g
ATGTCCACCAACTGGCCCTGGGCTCCCCGGAACCGCTCCAACACCAACCCCACACCCGAC
AATTGGAGCCACAAAAAGAGCCCCTTCCAACTGAACCACAGAATGGACCCCAACCAACAC
AACGACCTCCTGTACGGAGATGATGCGCCACCCTTGGCCAATCCAATCCCCTCATGGCTG
CTGGACGACTCCGATTACAAGGATCTCAAGCCCACCCCCGTCATGAACAACATGGCCGCA
ACCACCATGCAGTTCCCTGCATTTGCACCTCGAGTCAATCATCACCAACCTTCGATTTAT
AACTACCAGGAACCACCACGACCACGAAACCTGCCCTTGCCCGTGCCCACACGCAACTTC
CAGCCCTCCCACCTGGGCACCCAGTCCATCTCGCAGGAGCTGGAGGAGGCCCGTCGTCGG
CTGCAACAGTTGCAAGGGCTGGAAGCGCAAAGCAAAGAAAACGCACCGCAAACCCAATCC
ATCTACGAACCCGAAGTGTTCACCGCTGATGCACAATGGGATGCGCCCATCCAGCACTCA
TCCTTCAGTGCTCCACTGTCAACCCCTTTCTGGGACCGTCTTGCAGCTGCATCCACAGAA
GATACCACCACCAATAACGTGAGAGATACAGATACCCACTTTTTGATTGTCTTGAATAAC
AATAACGCTTTGTAGCCATTAACTAACACAGAAGTTCCGACCTCGACTCAACTCGGTCAA
CTACCGGGTCCTTCTTGAGAAGAACCTAGAATGTGACTGGTTCCTCATTGTCGAGAGAAT
CGTGTCTGAGAACGACCAACAAGCCTCCATCTTTCTGCAGCAGAAGCTAAAGGGAGGAAG
CGAAGACATCCGCGAGTCCATCATTGACTCAGTCACTAAATTATGCATTCCCCTTGTCAC
CAACCGCTTTGGAAACTTCCTTGTCCAGCGAAGCATCGAATATGCTAGCTCCCATAAGCG
TGCGCTGTTGGTGAAGCAGATGGTGGGTCACATGAGCGATCTTTCGGTAGATATTTTTGG
GTGCCATGTGGTCCAGAAGGCACTCGACTTCACCGACGACGAGGAGCTGAAGCGCCAGCT
GGTGGACGACCTGCTGGAGTCGGTGAGTGATACCATCAATCACAAGTACGCTTGCCATGT
GTGGCAGCGGGTGTTCGAGCTGGACAAAGGCATGCGGTCTCCACACTTCATGCAGAGTGT
GATTGAGTCGCTGCGAGGCCGATGGCTTGACATTTCGTCGAGCGAGTCCGGCAGCCTTGT
GATCCAGACCATGGTGCAAAACTGCACATATGAGGAGCTGGCTCTCAACGACGCCCTGGA
CGAGATCTCCTCGGCTGTTAAGGCCCTGGCAGTTTCTCGCTGGGGAAGTTGGGTCGTGCG
CCAGCTATGCAGCATGAACGGCCCCGGTGGGGATGCCATCCGCAGCCTTGTGTACGAAGA
GCTTTCCCATGACCTTTCTACCTACGGACTGGACTATTCGGCATGTAGGGTGTTGGAAAC
CATTGTGCAGAAGGATGATGGCAAGGACGGCAATGGAGCTCTACGGAAGCGCTATGTGGA
ATGGCTGGCGAAGGGGTCTCGACCGCCCCTCGTTAGCTTGGCACGTGATTCCAACGGCCA
TGTCATTGTTGTTGCTCTGTTGCAGGCCGGGGTCAAGGAGCCGTTGGAGACCATCATTCG
CAAGAACTACGTGACTCTGCGCAGCTCCAAGTTTGGTACCAAGATCTGTCGGATGATTTA
GACGTCAGCTAGCATATATAATGAATGAGAGTAGTTACAAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B03146g_CDS-001

Protein length: 556 aa.
Product: Conserved hypothetical protein

>YALI0B03146g_CDS-001 MSTNWPWAPRNRSNTNPTPDNWSHKKSPFQLNHRMDPNQHNDLLYGDDAPPLANPIPSWL
LDDSDYKDLKPTPVMNNMAATTMQFPAFAPRVNHHQPSIYNYQEPPRPRNLPLPVPTRNF
QPSHLGTQSISQELEEARRRLQQLQGLEAQSKENAPQTQSIYEPEVFTADAQWDAPIQHS
SFSAPLSTPFWDRLAAASTEDTTTNNKFRPRLNSVNYRVLLEKNLECDWFLIVERIVSEN
DQQASIFLQQKLKGGSEDIRESIIDSVTKLCIPLVTNRFGNFLVQRSIEYASSHKRALLV
KQMVGHMSDLSVDIFGCHVVQKALDFTDDEELKRQLVDDLLESVSDTINHKYACHVWQRV
FELDKGMRSPHFMQSVIESLRGRWLDISSSESGSLVIQTMVQNCTYEELALNDALDEISS
AVKALAVSRWGSWVVRQLCSMNGPGGDAIRSLVYEELSHDLSTYGLDYSACRVLETIVQK
DDGKDGNGALRKRYVEWLAKGSRPPLVSLARDSNGHVIVVALLQAGVKEPLETIIRKNYV
TLRSSKFGTKICRMI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG