YALI0B02706g

Overview

Description similar to uniprot|P14907 Saccharomyces cerevisiae YJL041W NSP1 Essential component of the nuclear pore complex, which mediates nuclear import and export
Locus type CDS
Locus tag YALI0B02706g

Location

Species Yarrowia lipolytica Positions 407058..408738
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1681 (nuc.)
Previous locus YALI0B02684g Next locus YALI0B02728g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B02706g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B02706gYALI0B02706g_mRNA-001YALI0B02706g_CDS-001

Nucleotide sequence

 

>YALI0B02706g
ATGAGCAGCGGATTCTCGTTTGGAGCCAACACTGGTAAAACTGGCGGAGGATTCAACCTG
GGCAACAATGCCTCTTCTGGTACCACCGGATCGGGATCCACCGGCTTCTCGTTTGGAGCT
GGTAACAACAACAACAAAACCACAAACAACACCAACACATCCGGAGGCACTGGCGGTCTT
TTTGGAGGAGGTGCCGCAGCTGGAGGAGCTGCCAAGCCCTCGTTATTCAGTGCCTCTGGC
GCTTCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCGTCATCTGCTCCCAAGTTT
AGTTTCGGTGCCACTCCTTCTGCTTCTACTCCTGCTGCATCGTCGACTGCCGCCCCTGCG
GCCTCTGGAGGTCTGTTTGGAGGAGGAGCCGCTTCTTCCAAGCCCTCGTTTGGAGGATTC
GGTGCTGCTAAGACCGACGATAAGCCTGCTGCTCCTGCCGCATCTACTGGAGGATTCTCG
TTTGGAGCCAAGCCTGCCGACGCTGCTGCCGCGCCTAAGCCTTCCTTTGGAGGTTTTGGA
GCAACCAAGACGGAAGACAAGCCCGCTGCTGCTTCTACTGACTCTGCTGCAAAGCCCAGC
TTCAGCTTTGGAGGAGCCACCAAGACTGAGGCTCCCAAACCTGCTGCCACCGGAGGATTT
TCTTTTGGTGCAAAAACCGAAGAGAAGAAGGATGAAGCTCCCAAGCCTGCAGCAACGGGC
GGTTTCTCTTTCGGAGGTGCCAAGACTGAGGAGAAGAAGGATGATACTGCTAAGCCTGCT
CTAAGCTTTGGAGGAGCCACCGCTGGAGCTCCCGCCGCCGGTACTACTGCCGCTGGCACC
ACAGGTACCGCTGCTCCCGCTGCTCCCGCTGCTGGAGGCCTATTTGGAGCCAAAAAGGAC
GATAAGAAGGAGGACGGAAAGACCTTGCCTTCTTTAACTGCTGCTCCTGCCACCTCTGCT
GCTTCTATGGCTTCCAAGACCCCCGTGGCGTCGGCTCAGCCCGTGTCCACCTCCAACCTC
AAGAACAAGTCAATGGAAGATATCATTTCCAAGTGGACCACAGAGCTGTCAACCCAGTCG
GAAGAGTTCAGACAGCAGGCTCAGGATATCATGGAGTGGGACAAGGTGCTTGTAGACAAC
GGCGACAAGATCTCCGACATTTATGCCAAGGTGATCCAGACAGAACAGACACAGACCAAG
GTGGACCAACTGTTGCAGTACGTCGGCAAGCAGCAGGACGATCTGGAGAGCCTGCTAACA
GGTTACGAGGAGGAGGCTTCTCGTCTACTGGGCGATCTGGCTGGCACTGATGGTCTTCAG
CCCGTGGACCAGGAGCGTGAGAACGCTTACAACCTTGCTGAGGATCTGGGTATCAAGCTG
GAGAGCATGGGTGGCAACCTTTCTTCTGTGATTGAAGAGGTGAACAAGATTTCCAACGAC
ATCAACAACTTCCATCGAGATGATGCTCTGACCCAGATTGTCAAGATTCTCAACTCCCAT
CTCTCGTCTCTGCAGTGGATCGACTCCAACACCCAGAGTTTGGAGCAGAATATTGAGGCC
ATCAAGCTGCTGGAGAAGCAGGTCAACTCTCGAATGTACGGTAGATAGGAGGACAGCCAG
GTGGATGATTTCTAAGTAATGGATGATGTAATTTTATGGCTTCACAAACATAGACAGACT
G

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B02706g_CDS-001

Protein length: 536 aa.
Product: FG-nucleoporin component of central core of the nuclear pore complex, putative

>YALI0B02706g_CDS-001 MSSGFSFGANTGKTGGGFNLGNNASSGTTGSGSTGFSFGAGNNNNKTTNNTNTSGGTGGL
FGGGAAAGGAAKPSLFSASGASGAGAGAGAGAGASSAPKFSFGATPSASTPAASSTAAPA
ASGGLFGGGAASSKPSFGGFGAAKTDDKPAAPAASTGGFSFGAKPADAAAAPKPSFGGFG
ATKTEDKPAAASTDSAAKPSFSFGGATKTEAPKPAATGGFSFGAKTEEKKDEAPKPAATG
GFSFGGAKTEEKKDDTAKPALSFGGATAGAPAAGTTAAGTTGTAAPAAPAAGGLFGAKKD
DKKEDGKTLPSLTAAPATSAASMASKTPVASAQPVSTSNLKNKSMEDIISKWTTELSTQS
EEFRQQAQDIMEWDKVLVDNGDKISDIYAKVIQTEQTQTKVDQLLQYVGKQQDDLESLLT
GYEEEASRLLGDLAGTDGLQPVDQERENAYNLAEDLGIKLESMGGNLSSVIEEVNKISND
INNFHRDDALTQIVKILNSHLSSLQWIDSNTQSLEQNIEAIKLLEKQVNSRMYGR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG