YALI0B01738g

Overview

Description weakly similar to uniprot|Q04947 Saccharomyces cerevisiae YDR233c RTN1 (ohnolog of YDL204W) ER membrane protein that interacts with exocyst subunit Sec6p and with Yip3p
Locus type CDS
Locus tag YALI0B01738g

Location

Species Yarrowia lipolytica Positions 264715..266062
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1348 (nuc.)
Previous locus YALI0B01716g Next locus YALI0B01760g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B01738g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B01738gYALI0B01738g_mRNA-001YALI0B01738g_CDS-001

Nucleotide sequence

 

>YALI0B01738g
ATGTCTGCTCCCGTTGCTACTCCCTCCCACCATACTGTGCCCGTGGCTCACACTGCCCCC
GCGGCTCACACCGTCCCCGTGGCTCACGCCCCCGGCACCACCGAGACCGCCACCCACCCC
ACTCACCCCGTGGTGTCCAAATCCAAGCTCAATTTCCCCCGAGTGCTGACCTGGATCGAC
CCCGTCGCCTCCGCCCGGTCGCTGGTCACCATTCTGGGTCTGCTGTACCTCGCCAAGTAC
GGCAACCTCTTCCGACTGGCCCTGCGATTCTCCTACTGGGCCATTGGCCTGGGTGTCGCC
ACCGAGTTTATCACTGGCAAGGCCACCGGCCAGAAGCACGGTCTTGTCTCTTACTACAAG
CCCTCCTCCTACATTCCTCTGTCCGAGGCCACGGTGACCCGATTTGCCCAGGCTCTAGGC
AAGAACGTCGTTGCCGCCTTCGACCACGTCAAGGGCTACCTCGACGCCGACAACCTGCAC
TCCTCCTTCCACGCTGCTCTCTTCACTTGGGTTCTCTACCATGTGACCAAGTTTGTGTCT
GTGTGGTCTCTCGCCCTCACCGCCACTATCCTCGCCTTCGCCATCCCCCCTGTCTACCTC
CAGTTCCAGGAGCCCATCGACCAAACCATTGACGTTGCCTCCGAGAAGGTCCACGAGGAG
CTCTCCAAGGTCCAGAAGCAGATTGAGGCTGCCGCTGGTCCCCACATCAAGACCGTCAAG
CAGCAGGTGTCCAAGGTTACCGACCAGCTCGGCCTCACCCGAGGTGGCTTCCCTCTTGAG
GCCGATGCCAACAAGGTCAACCCCCATGCTTCTTCCACCATTGATCCTTCCGTCCAGCAC
ACCTCCAAGCCCGTGTCTGCTGCTGCTGGCGGCGTCCCCACCAACGCCAAGGCCTCTACC
CCCGCCAACGTTGCTGCCCACGCCTCCAACGCCGCCGCTGCCGAGTTCAAGCCTTCCGAG
CCCGTCAAGGTCGCTGCTGTCCCCGTCCCCGTGGCTGTGCCCGTTGCTGTGCCCGAGCCC
TCTTTCCCTTCCGTGCCTTCCAAGGCCCCTGCTCCCTCCGCCAACCACCCTGTTGACGAG
GTCAAGCAGGCTCTGAACGCCTCTCGACAGGCCGTCCCCAACCAGCTTTAAGCGTAAAAG
CGGTATGTATTAATTGAGAGTTTTATAAGACAGTGTTTGCGCGAGCTGACGAGTGTTTGC
CGAGTGCATATCACAACGAGAACCTGAGAGCCACGCAATGTGTGGTTGTAGTGTGGATAT
GCCCATGAGACAATGGTAGTGTGGAGAATACCCATGAGACGATGGTAATGTAAAGAATGG
CCCACGAGATGCAATTGAGGCCCAATTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B01738g_CDS-001

Protein length: 377 aa.
Product: Conserved hypothetical protein

>YALI0B01738g_CDS-001 MSAPVATPSHHTVPVAHTAPAAHTVPVAHAPGTTETATHPTHPVVSKSKLNFPRVLTWID
PVASARSLVTILGLLYLAKYGNLFRLALRFSYWAIGLGVATEFITGKATGQKHGLVSYYK
PSSYIPLSEATVTRFAQALGKNVVAAFDHVKGYLDADNLHSSFHAALFTWVLYHVTKFVS
VWSLALTATILAFAIPPVYLQFQEPIDQTIDVASEKVHEELSKVQKQIEAAAGPHIKTVK
QQVSKVTDQLGLTRGGFPLEADANKVNPHASSTIDPSVQHTSKPVSAAAGGVPTNAKAST
PANVAAHASNAAAAEFKPSEPVKVAAVPVPVAVPVAVPEPSFPSVPSKAPAPSANHPVDE
VKQALNASRQAVPNQL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG