YALI0B00198g

Overview

Description similar to uniprot|Q02932 Saccharomyces cerevisiae YPL125w KAP120 nuclear transport factor, member of karyopherin-beta family
Locus type CDS
Locus tag YALI0B00198g

Location

Species Yarrowia lipolytica Positions 12018..15007
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 2990 (nuc.)
Previous locus YALI0B00176r Next locus YALI0B00220g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B00198g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B00198gYALI0B00198g_mRNA-001YALI0B00198g_CDS-001

Nucleotide sequence

 

>YALI0B00198g
ATGGATTTGACACCAGAAAACTTATTGCAGGCGCTGGAAGCTGCCGGAGATCAGAGTGTG
GGGGGGCCACGAGATTCGGGGCAGCAACAGCTCAAGCTGTGGGAGCAGGTTCCGGGGTTC
TTCTCTCTGCTCCAAGACGCCTATCTCGATCAATCTCTGCCTATTCAGGTGCGATGGATC
GCAGTGATTTACTTCAAAAACGAGAGCGAGCGCCACTGGCGCAAGTCGGCGCCGTACGCA
GTGTCCGAGCAGGAAAAAACCGCCATTCGATCCAAGGTGTTTGGGTGCATTGATGAGTCG
AATCGCCAACTGATGATCCACAATGCATATGCCATTGCGCGGCTGGCGCGAATGGACGTG
CCTGGCGACTGGCCTGATCTCATGGACCAGCTGCTGCAACTGCTGCGCCAGGGCGTGGAG
TCGCAAAACTACACAAAACAACACAATGTGCTGACGGTGCTCAACCAGGTGATCAAGGCC
TTCTCCATCTCGCGGTTCGGCCGTGTGCGCCAGGCACTGCTGGAGTCATCGCCGGCCATC
CTGACACTTGTCACGGACCTCTACGCCAACTACTCCGAGGCCTGGATGGGCGACGTGGAA
AACAACACCGCCAAGATGGAAATCACGCATCTGTGTCTCAAGCTGGCACGGCGGCTCATT
GCCGAGGGACACGACCGGGCCAACCGGTCCGAGGACTGCCGACGATTCTTCCAGATCACC
GTTGTGCAGCTTCCCGAGTTTCTCACAATGTACTCGGACCGTTTCTCCGGCAACGCGCTA
CTGGAGAAACACGTGCGGGGAGTCGGCAAGCTCTACCACACCATGCGGGAGCGGCAGTCA
GTGTCGTTTGTGCTCATGCCCGACTCGCTCAAGGTCGCAGAGCTGTACCTGCAGCTGATT
GAGAGCAAGAAGGAGCTGTTCCACCAGGACGACGACGCCGCTGAAGAAGCCGCTGAGGAC
TGGACCAAGGTTGTGGTCCAGGGAATGCTGCTCATCAAGCATCTCATTGGCGTGCTCTAC
CGAAACGGCGCTTCCAACTTGCTCACATACAAGACCGACGAGGACAAGGAGGAGACCAAG
GTGGCCGTGGACATGCTACGGCAGTTTTTCTCCGAGGCGCTGGTTCAGCACCTTACCGAG
CTTCTAGTCACGTGGTACTTGCGTCTTCGACCCGCTGATCTGGTCGAGTGGCACGATAAC
CCCGAAGAGTGGGCCAATGAGGATCTCAACAATGCATGGGAGTACCAGTTGAGAGCGTGC
AGCGAAAAGCTGTATGGCGATTTGGCAATCAACTTCCGGGAGATTGTCGTTCCCATGGTT
CTGAAGAACCTGGAGCAGAGTACTTCTTCCTCCGATGTGTTGGCCAAGGACGCTGCTCTT
GCGGCGTTCGCGACCGGCTCGGCTGCTATCTCTAAAGAGGACTCTGCCGACTTTGACCAG
ATTTTCCCCCAGGTTATCATCCCTCAGGGCCTGGCCAACGGTTCTTCCGAGTACCGTGTG
CTTCGAAGACGTGTGGCGATTGTTCTGGGCGAATGGATCACGATTCAGTGCTCTCCCGAG
AACAGAATCAAGGCCTACGAGCTCATGGTACATCTTTTGAACCCGCAGGATCCTTTGAAC
GACGTTGTGGTTCGTATTACAGCTGCTGCCGCTCTCCGGTTCACTGTGGACGATTGGGAT
TTCGAAATTGATGGCTTCTTGCCGTTTGTGGGCGACATCTTTGTCCGTCTTTTTGCTCTG
CTCAAGGAGGTGAAGCAGATTGACTCCAAGGTTGTACTGCTTCGAACCGTTGCTGTTGTG
GCAGATAGAATCGGTGCTCGAGTTTCCCCGTACGCTGATACGGTGCTTGAGATGCTGCCC
GCATTATGGGAGGAAGCTGGAGAGCAGCAGTACCTGCGAGTCACCATTGTCCAAGTGCTG
ACTTCTCTGGTCCAATCGCTTGGACGAGACTCCACGAAGACTTACAACATTGGCATGCCT
GTTATGAACGTGTCTCTGGACCGAGAGTCTCCCTTCCACGCTTTTTTGTACGACGATTCG
TTACTGTTGTGGGAGGCTCTTGTCAAGAATGCTCCTGAGCCCAACGACACCATCTTCCAG
CTCTTCCCTGCTGTCACTGACGCTCTGGACCGGTCCACGGAGAACCTGTACTTCATTCTA
AAGATTCTAGAAGGATATGCTCTTCTGTCTCCCGATTACACGGTTCAGAAGCACGGCCAC
ACCCTGCTGAGCATCTTTGGCAAGTACATGGACATTTTGTCGTTTGATGTGGTGCAGCAG
GTAGCGCAGTGTGTGGAGTACATGACCTTCTGTTCGAACCCCACGCAGCTCATCCAGCTG
GCTGTTCAGACGGGCTTTTTCAAGGCCATGATCAACTATATTATCGATAAGGACCAGAAC
TCGTCTCCCACAGCCATTTCTGACTTGCTACAGGTCCTGGCTCGTATGATTATTGCTGCT
CCCAACTTCCTCATGGAGGCTGTTGCTGAGCCGGAGGTTCGATCTGCAGTCATTACAGCC
TGGCTGGCCAAGTTCCAGAGCATGTGCAAGCCCCACGAGCGCAAGCTGGCGACTCTGGGT
CTCACAGCGCTCCTTTCGTCTGGAGACCCTGTTGTCAAGCAGCATATGAAGGATATTGTG
GGCTGCTGGGTCGAGCTGACCGATGAGGTGGCGGAAAATGAGCAGGGAGACTGTAATGTC
TACTACAGTGTTTCCGAGTGGGTTGATCCCGATGAGCCCGTGTCCCCTCACACTCAGCGT
CAGCAGGATATCAAGAAGAAGGACCCCATTCACACCTATCCCACCAAGGCGTACATTCAG
TCGTCCTGCCAGAAGGCCAAGGAGAATGTGGGGGATTCTTTCCAGGAGTGGTTCGCCGAG
TGCGGAGCTGTCAATCTCGGCTCCTTTGGACTGTAGATAGTGGTGTATGAAAGAATACAC
GTTAGCATATTACAAGTAAATACACGAAAAATAGATTTCAACATTAAATT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B00198g_CDS-001

Protein length: 972 aa.
Product: Karyopherin responsible for the nuclear import of Rfp1p, putative

>YALI0B00198g_CDS-001 MDLTPENLLQALEAAGDQSVGGPRDSGQQQLKLWEQVPGFFSLLQDAYLDQSLPIQVRWI
AVIYFKNESERHWRKSAPYAVSEQEKTAIRSKVFGCIDESNRQLMIHNAYAIARLARMDV
PGDWPDLMDQLLQLLRQGVESQNYTKQHNVLTVLNQVIKAFSISRFGRVRQALLESSPAI
LTLVTDLYANYSEAWMGDVENNTAKMEITHLCLKLARRLIAEGHDRANRSEDCRRFFQIT
VVQLPEFLTMYSDRFSGNALLEKHVRGVGKLYHTMRERQSVSFVLMPDSLKVAELYLQLI
ESKKELFHQDDDAAEEAAEDWTKVVVQGMLLIKHLIGVLYRNGASNLLTYKTDEDKEETK
VAVDMLRQFFSEALVQHLTELLVTWYLRLRPADLVEWHDNPEEWANEDLNNAWEYQLRAC
SEKLYGDLAINFREIVVPMVLKNLEQSTSSSDVLAKDAALAAFATGSAAISKEDSADFDQ
IFPQVIIPQGLANGSSEYRVLRRRVAIVLGEWITIQCSPENRIKAYELMVHLLNPQDPLN
DVVVRITAAAALRFTVDDWDFEIDGFLPFVGDIFVRLFALLKEVKQIDSKVVLLRTVAVV
ADRIGARVSPYADTVLEMLPALWEEAGEQQYLRVTIVQVLTSLVQSLGRDSTKTYNIGMP
VMNVSLDRESPFHAFLYDDSLLLWEALVKNAPEPNDTIFQLFPAVTDALDRSTENLYFIL
KILEGYALLSPDYTVQKHGHTLLSIFGKYMDILSFDVVQQVAQCVEYMTFCSNPTQLIQL
AVQTGFFKAMINYIIDKDQNSSPTAISDLLQVLARMIIAAPNFLMEAVAEPEVRSAVITA
WLAKFQSMCKPHERKLATLGLTALLSSGDPVVKQHMKDIVGCWVELTDEVAENEQGDCNV
YYSVSEWVDPDEPVSPHTQRQQDIKKKDPIHTYPTKAYIQSSCQKAKENVGDSFQEWFAE
CGAVNLGSFGL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG