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Saccharomyces cerevisiae S288c


Strain details

Complete name: Saccharomyces cerevisiae S288c

Version

Added in GRYC: 2025-02-16
Last update: 2025-02-16


Quality

refseq


Assembly overview

Status chromosome
#chromosomes 17
Length 12,157,105 bp.
N50 924,431
%GC 38.15%
Bio-project PRJNA43747
External accession GCF_000146045.2
0*1061*1062*106NC_001133NC_001134NC_001135NC_001136NC_001137NC_001138NC_001139NC_001140NC_001141NC_001142NC_001143NC_001144NC_001145NC_001146NC_001147NC_001148NC_001224

Genome annotation

The genome annotation of Saccharomyces cerevisiae S288c consists of 6267 annotated loci, including 5958 protein coding genes, 10 of them are pseudo-genes.

Seq. name Length %GC #Loci #Coding genes #pseudo-gene
NC_001133 230,218 39.27 99 95 1
NC_001134 813,184 38.34 423 410 0
NC_001135 316,620 38.53 175 165 2
NC_001136 1,531,933 37.91 785 757 0
NC_001137 576,874 38.51 305 285 0
NC_001138 270,161 38.73 138 128 1
NC_001139 1,090,940 38.06 572 536 0
NC_001140 562,643 38.5 300 289 0
NC_001141 439,888 38.9 229 219 3
NC_001142 745,751 38.37 383 359 0
NC_001143 666,816 38.07 334 318 0
NC_001144 1,078,177 38.48 548 516 2
NC_001145 924,431 38.2 488 467 0
NC_001146 784,333 38.64 408 395 0
NC_001147 1,091,291 38.16 561 542 0
NC_001148 948,066 38.06 485 468 1
NC_001224 85,779 17.11 34 9 0

Download

You can download sequence and/or annotation data by clicking on the following file logos.
You have two possibilities:

  • Separated files: to download a zipped file that contains one file per chromosome/scaffold,
  • Merged files: to download a zipped file that contains a single file for all the chromosome/scaffold of the strain.

The different types of data are:
  • Proteins: Multi-fasta file(s) of all the proteins from the CDS features. These files do not include translations from features that are annotated as pseudo-genes,
  • Loci: Multi-fasta file(s) of all the DNA sequences of all the annotated loci,
  • Chromosomes/Scaffolds/Contigs: (Multi-)fasta files of the chromosomes/scaffolds/contigs of the strain,
  • Annotation (EMBL): Complete genome annotations in EMBL format,
  • Annotation (GFF3): Annotations of all the transcripts in GFF3 format.


Proteins Loci chromosomes Annotations (EMBL) Annotations (GFF3)
Separated files All proteins in fasta All loci in fasta All chromosomes in fasta All chromosome annotations in embl All chromosome annotations in gff3
Merged files All proteins in fasta All loci in fasta All chromosomes in fasta All chromosome annotations in embl All chromosome annotations in gff3

References

No reference.

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