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Candida railenensis CLIB 1423


Strain details

Complete name: Candida railenensis CLIB 1423

Collection url: CLIB 1423

Version

Added in GRYC: 2025-02-08
Last update: 2025-02-08


Quality

manual-curation go-FAnnoT


Assembly overview

Status scaffold
#scaffolds 58
Length 13,802,650 bp.
N50 539,109
%GC 39.16%
Bio-project PRJEB51943
External accession GCA_935541525.1
0*1061*1062*106CLIB1423_01SCLIB1423_02SCLIB1423_03SCLIB1423_04SCLIB1423_05SCLIB1423_06SCLIB1423_07SCLIB1423_08SCLIB1423_09SCLIB1423_10SCLIB1423_11SCLIB1423_12SCLIB1423_13SCLIB1423_14SCLIB1423_15SCLIB1423_16SCLIB1423_17SCLIB1423_18SCLIB1423_19SCLIB1423_20SCLIB1423_21SCLIB1423_22SCLIB1423_23SCLIB1423_24SCLIB1423_25SCLIB1423_26SCLIB1423_27SCLIB1423_28SCLIB1423_29SCLIB1423_30SCLIB1423_31SCLIB1423_32SCLIB1423_33SCLIB1423_34SCLIB1423_35SCLIB1423_36SCLIB1423_37SCLIB1423_38SCLIB1423_39SCLIB1423_40SCLIB1423_41SCLIB1423_42SCLIB1423_43SCLIB1423_44SCLIB1423_45SCLIB1423_46SCLIB1423_47SCLIB1423_48SCLIB1423_49SCLIB1423_50SCLIB1423_51SCLIB1423_52SCLIB1423_53SCLIB1423_54SCLIB1423_55SCLIB1423_56SCLIB1423_57SCLIB1423_58S

Genome annotation

The genome annotation of Candida railenensis CLIB 1423 consists of 6243 annotated loci, including 6004 protein coding genes, 0 of them are pseudo-genes.

Seq. name Length %GC #Loci #Coding genes #pseudo-gene
CLIB1423_01S 1,319,235 38.93 589 571 0
CLIB1423_02S 1,228,170 39.24 553 533 0
CLIB1423_03S 862,207 38.71 376 365 0
CLIB1423_04S 747,755 39.05 343 333 0
CLIB1423_05S 711,081 38.84 313 297 0
CLIB1423_06S 680,623 38.31 314 303 0
CLIB1423_07S 619,137 39.69 295 280 0
CLIB1423_08S 546,591 39.45 230 223 0
CLIB1423_09S 539,109 39.3 250 247 0
CLIB1423_10S 517,625 39.88 241 231 0
CLIB1423_11S 480,729 38.86 215 204 0
CLIB1423_12S 417,752 38.88 188 185 0
CLIB1423_13S 378,657 40.56 178 169 0
CLIB1423_14S 372,404 39.04 159 153 0
CLIB1423_15S 355,915 41.11 159 158 0
CLIB1423_16S 344,846 39.37 161 154 0
CLIB1423_17S 343,080 38.75 151 150 0
CLIB1423_18S 323,377 40.32 153 149 0
CLIB1423_19S 271,948 39.52 125 118 0
CLIB1423_20S 218,257 39.91 100 94 0
CLIB1423_21S 209,231 39.52 94 93 0
CLIB1423_22S 196,256 40.12 93 90 0
CLIB1423_23S 166,953 40.03 79 73 0
CLIB1423_24S 157,150 38.1 62 61 0
CLIB1423_25S 141,756 39.64 66 66 0
CLIB1423_26S 135,393 37.71 57 57 0
CLIB1423_27S 122,168 39.41 59 55 0
CLIB1423_28S 121,297 39.28 54 52 0
CLIB1423_29S 113,923 37.26 61 55 0
CLIB1423_30S 103,274 40.2 43 41 0
CLIB1423_31S 94,868 39.75 38 37 0
CLIB1423_32S 91,210 39.65 48 45 0
CLIB1423_33S 75,541 38.37 34 34 0
CLIB1423_34S 70,517 38.67 27 27 0
CLIB1423_35S 69,782 37.97 33 33 0
CLIB1423_36S 66,947 37.76 31 30 0
CLIB1423_37S 64,152 38.43 27 27 0
CLIB1423_38S 61,204 40.37 26 26 0
CLIB1423_39S 55,481 37.58 23 23 0
CLIB1423_40S 54,228 39.1 20 20 0
CLIB1423_41S 53,961 39.17 24 24 0
CLIB1423_42S 45,542 39.39 25 25 0
CLIB1423_43S 39,593 37.89 18 14 0
CLIB1423_44S 28,822 38.84 13 13 0
CLIB1423_45S 20,164 40.66 10 10 0
CLIB1423_46S 18,979 37.36 8 7 0
CLIB1423_47S 17,948 37.51 7 7 0
CLIB1423_48S 13,207 35.82 5 5 0
CLIB1423_49S 12,612 36.85 2 2 0
CLIB1423_50S 11,434 35.92 5 4 0
CLIB1423_51S 10,607 40.5 2 2 0
CLIB1423_52S 10,127 37.15 6 6 0
CLIB1423_53S 8,732 36.98 2 2 0
CLIB1423_54S 7,422 37.48 3 3 0
CLIB1423_55S 6,973 36.38 3 3 0
CLIB1423_56S 6,560 38.43 2 2 0
CLIB1423_57S 5,376 37.57 1 1 0
CLIB1423_58S 34,762 24.14 39 12 0

Download

You can download sequence and/or annotation data by clicking on the following file logos.
You have two possibilities:

  • Separated files: to download a zipped file that contains one file per chromosome/scaffold,
  • Merged files: to download a zipped file that contains a single file for all the chromosome/scaffold of the strain.

The different types of data are:
  • Proteins: Multi-fasta file(s) of all the proteins from the CDS features. These files do not include translations from features that are annotated as pseudo-genes,
  • Loci: Multi-fasta file(s) of all the DNA sequences of all the annotated loci,
  • Chromosomes/Scaffolds/Contigs: (Multi-)fasta files of the chromosomes/scaffolds/contigs of the strain,
  • Annotation (EMBL): Complete genome annotations in EMBL format,
  • Annotation (GFF3): Annotations of all the transcripts in GFF3 format.


Proteins Loci scaffolds Annotations (EMBL) Annotations (GFF3)
Separated files All proteins in fasta All loci in fasta All chromosomes in fasta All chromosome annotations in embl All chromosome annotations in gff3
Merged files All proteins in fasta All loci in fasta All chromosomes in fasta All chromosome annotations in embl All chromosome annotations in gff3

References

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Reported issues

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