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  4. CLIB 1444

Candida jaroonii CLIB 1444


Strain details

Complete name: Candida jaroonii CLIB 1444

Collection url: CLIB 1444

Version

Added in GRYC: 2025-02-08
Last update: 2025-02-08


Quality

manual-curation go-FAnnoT


Assembly overview

Status scaffold
#scaffolds 31
Length 10,580,516 bp.
N50 697,134
%GC 34.02%
Bio-project PRJEB50290
External accession GCA_943733655.1
0*1061*1062*106CLIB1444_01SCLIB1444_02SCLIB1444_03SCLIB1444_04SCLIB1444_05SCLIB1444_06SCLIB1444_07SCLIB1444_08SCLIB1444_09SCLIB1444_10SCLIB1444_11SCLIB1444_12SCLIB1444_13SCLIB1444_14SCLIB1444_15SCLIB1444_16SCLIB1444_17SCLIB1444_18SCLIB1444_19SCLIB1444_20SCLIB1444_21SCLIB1444_22SCLIB1444_23SCLIB1444_24SCLIB1444_25SCLIB1444_26SCLIB1444_27SCLIB1444_28SCLIB1444_29SCLIB1444_30SCLIB1444_31S

Genome annotation

The genome annotation of Candida jaroonii CLIB 1444 consists of 6029 annotated loci, including 5876 protein coding genes, 0 of them are pseudo-genes.

Seq. name Length %GC #Loci #Coding genes #pseudo-gene
CLIB1444_01S 1,673,746 33.26 935 919 0
CLIB1444_02S 1,540,382 33.4 872 843 0
CLIB1444_03S 945,137 34.48 539 535 0
CLIB1444_04S 874,329 35.23 514 502 0
CLIB1444_05S 697,134 34.36 409 405 0
CLIB1444_06S 620,601 34.94 349 338 0
CLIB1444_07S 588,263 33 347 337 0
CLIB1444_08S 463,962 33.63 264 259 0
CLIB1444_09S 395,561 33.2 232 230 0
CLIB1444_10S 384,003 32.83 237 229 0
CLIB1444_11S 339,011 34.64 178 173 0
CLIB1444_12S 333,399 35.62 178 176 0
CLIB1444_13S 281,015 33.69 171 168 0
CLIB1444_14S 235,229 37.12 126 126 0
CLIB1444_15S 221,497 32.72 112 112 0
CLIB1444_16S 166,297 32.46 91 87 0
CLIB1444_17S 117,336 34.15 60 58 0
CLIB1444_18S 110,382 33.22 67 65 0
CLIB1444_19S 108,173 35.83 53 53 0
CLIB1444_20S 101,321 32.8 62 61 0
CLIB1444_21S 92,267 33.04 52 50 0
CLIB1444_22S 74,110 36.9 35 35 0
CLIB1444_23S 72,491 38.8 41 41 0
CLIB1444_24S 52,952 38.65 30 29 0
CLIB1444_25S 28,910 33.78 18 18 0
CLIB1444_26S 11,578 35.93 4 4 0
CLIB1444_27S 9,173 36.59 2 2 0
CLIB1444_28S 7,217 44.24 5 1 0
CLIB1444_29S 6,532 35.41 3 3 0
CLIB1444_30S 6,353 39.75 3 3 0
CLIB1444_31S 22,155 22.78 40 14 0

Download

You can download sequence and/or annotation data by clicking on the following file logos.
You have two possibilities:

  • Separated files: to download a zipped file that contains one file per chromosome/scaffold,
  • Merged files: to download a zipped file that contains a single file for all the chromosome/scaffold of the strain.

The different types of data are:
  • Proteins: Multi-fasta file(s) of all the proteins from the CDS features. These files do not include translations from features that are annotated as pseudo-genes,
  • Loci: Multi-fasta file(s) of all the DNA sequences of all the annotated loci,
  • Chromosomes/Scaffolds/Contigs: (Multi-)fasta files of the chromosomes/scaffolds/contigs of the strain,
  • Annotation (EMBL): Complete genome annotations in EMBL format,
  • Annotation (GFF3): Annotations of all the transcripts in GFF3 format.


Proteins Loci scaffolds Annotations (EMBL) Annotations (GFF3)
Separated files All proteins in fasta All loci in fasta All chromosomes in fasta All chromosome annotations in embl All chromosome annotations in gff3
Merged files All proteins in fasta All loci in fasta All chromosomes in fasta All chromosome annotations in embl All chromosome annotations in gff3

References

No reference.

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Reported issues

No issue.